Variant report

Variant	rs11643101
Chromosome Location	chr16:71459439-71459440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71452691..71455669-chr16:71459394..71461176,2	MCF-7	breast:
2	chr16:71457633..71459826-chr16:71493522..71496195,3	K562	blood:
3	chr16:71451545..71453990-chr16:71457536..71460317,2	K562	blood:

Variant related genes	Relation type
ENSG00000247324	Chromatin interaction
ENSG00000167377	Chromatin interaction
ENSG00000262120	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1105097	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11075888	1.00[JPT][hapmap]
rs11641122	0.80[JPT][hapmap]
rs11644434	0.91[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11861540	1.00[JPT][hapmap]
rs12446461	0.81[CHB][hapmap]
rs1609868	0.81[CHB][hapmap]
rs1609869	0.81[CHB][hapmap]
rs2070832	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2288486	0.82[JPT][hapmap]
rs2288487	0.82[JPT][hapmap]
rs3813743	0.82[JPT][hapmap]
rs3892120	0.96[ASN][1000 genomes]
rs4149499	0.80[JPT][hapmap]
rs4363868	0.93[JPT][hapmap];0.93[AFR][1000 genomes]
rs4620964	0.87[ASN][1000 genomes]
rs6499523	0.80[CHB][hapmap]
rs7184543	0.86[CEU][hapmap]
rs7187165	0.82[JPT][hapmap]
rs7187354	0.82[JPT][hapmap]
rs7188342	0.82[JPT][hapmap]
rs7192986	0.92[ASN][1000 genomes]
rs7200431	0.82[JPT][hapmap]
rs7202340	1.00[JPT][hapmap]
rs730470	0.81[CHB][hapmap]
rs732318	0.81[CHB][hapmap]
rs8051212	0.81[CHB][hapmap]
rs8058294	0.82[JPT][hapmap]
rs9933680	0.86[CEU][hapmap]
rs9935426	0.82[JPT][hapmap]
rs9936249	0.82[JPT][hapmap]
rs9940771	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71446800-71459600	Weak transcription	Spleen	Spleen
2	chr16:71457000-71461000	Weak transcription	Right Atrium	heart
3	chr16:71458400-71459600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:71458800-71459600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:71459000-71459600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:71459200-71459600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr16:71459200-71459600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr16:71459200-71459800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr16:71459200-71460000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr16:71459200-71461200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr16:71459400-71459600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:71459400-71459600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr16:71459400-71459600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr16:71459400-71459600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr16:71459400-71459800	Flanking Active TSS	HepG2	liver
16	chr16:71459400-71460000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr16:71459400-71460800	Active TSS	H1 Cell Line	embryonic stem cell
18	chr16:71459400-71460800	Active TSS	H9 Cell Line	embryonic stem cell
19	chr16:71459400-71460800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr16:71459400-71461000	Active TSS	iPS-15b Cell Line	embryonic stem cell

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