Variant report

Variant	rs4620964
Chromosome Location	chr16:71466088-71466089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71463484..71466764-chr16:71493078..71496827,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167377	Chromatin interaction
ENSG00000247324	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10500558	0.80[ASN][1000 genomes]
rs11640165	0.80[ASN][1000 genomes]
rs11641492	0.80[ASN][1000 genomes]
rs11643101	0.87[ASN][1000 genomes]
rs11643216	0.80[ASN][1000 genomes]
rs11644434	0.85[ASN][1000 genomes]
rs11645711	0.89[ASN][1000 genomes]
rs12446461	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13331346	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1609868	0.84[ASN][1000 genomes]
rs1609869	0.82[ASN][1000 genomes]
rs2004672	0.86[AMR][1000 genomes]
rs2070832	0.82[CEU][hapmap];0.90[AMR][1000 genomes]
rs2288486	0.82[ASN][1000 genomes]
rs2288487	0.84[ASN][1000 genomes]
rs2288488	0.82[ASN][1000 genomes]
rs2303788	0.82[ASN][1000 genomes]
rs28372238	0.88[AMR][1000 genomes]
rs310334	0.91[CEU][hapmap];0.84[AMR][1000 genomes]
rs35916432	0.82[AMR][1000 genomes]
rs3813743	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3892120	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4149498	0.80[ASN][1000 genomes]
rs4503795	0.82[ASN][1000 genomes]
rs58134724	0.81[ASN][1000 genomes]
rs58719913	0.80[ASN][1000 genomes]
rs6499523	0.91[CEU][hapmap]
rs7187165	0.82[ASN][1000 genomes]
rs7187354	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7188342	0.82[ASN][1000 genomes]
rs7192986	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7199373	0.81[ASN][1000 genomes]
rs7200431	0.81[ASN][1000 genomes]
rs7202953	0.89[AMR][1000 genomes]
rs730470	0.81[ASN][1000 genomes]
rs732318	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74027246	0.80[ASN][1000 genomes]
rs8044561	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8051212	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8058294	0.81[ASN][1000 genomes]
rs8058776	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8061078	0.92[CEU][hapmap];0.84[AMR][1000 genomes]
rs9302623	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9926110	0.91[CEU][hapmap];0.88[AMR][1000 genomes]
rs9935426	0.80[ASN][1000 genomes]
rs9936249	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9940771	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71461200-71467000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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