Variant report

Variant	rs58134724
Chromosome Location	chr16:71526091-71526092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:44)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:44 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:71525418-71526418	K562	blood:	n/a	n/a
2	GATA2	chr16:71525963-71526374	K562	blood:	n/a	n/a
3	SMARCA4	chr16:71525298-71526418	K562	blood:	n/a	n/a
4	ZMIZ1	chr16:71526000-71526320	K562	blood:	n/a	n/a
5	JUN	chr16:71526001-71526313	K562	blood:	n/a	n/a
6	EP300	chr16:71525584-71526576	K562	blood:	n/a	n/a
7	GATA1	chr16:71525055-71527532	PBDE	blood:	n/a	n/a
8	IRF1	chr16:71526026-71526294	K562	blood:	n/a	n/a
9	MAFF	chr16:71525906-71526376	K562	blood:	n/a	chr16:71526136-71526154
10	TEAD4	chr16:71525848-71526360	K562	blood:	n/a	n/a
11	POLR2A	chr16:71525987-71526233	K562	blood:	n/a	n/a
12	NFE2	chr16:71525963-71526328	K562	blood:	n/a	chr16:71526138-71526153
13	MAFK	chr16:71525959-71526336	K562	blood:	n/a	chr16:71526138-71526153
14	TEAD4	chr16:71525832-71526590	K562	blood:	n/a	n/a
15	NR2F2	chr16:71525958-71526306	K562	blood:	n/a	n/a
16	JUND	chr16:71525953-71526414	K562	blood:	n/a	n/a
17	CCNT2	chr16:71525998-71526323	K562	blood:	n/a	n/a
18	BHLHE40	chr16:71526015-71526273	K562	blood:	n/a	n/a
19	MAFK	chr16:71525971-71526329	IMR90	lung:	n/a	chr16:71526138-71526153
20	MAFF	chr16:71525972-71526325	HepG2	liver:	n/a	chr16:71526136-71526154
21	MAFK	chr16:71525984-71526303	H1-hESC	embryonic stem cell:	n/a	chr16:71526138-71526153
22	TBL1XR1	chr16:71525633-71526281	K562	blood:	n/a	n/a
23	STAT5A	chr16:71525941-71526327	K562	blood:	n/a	n/a
24	HMGN3	chr16:71526024-71526299	K562	blood:	n/a	n/a
25	MAFK	chr16:71525966-71526329	HepG2	liver:	n/a	chr16:71526138-71526153
26	STAT5A	chr16:71525874-71526379	K562	blood:	n/a	n/a
27	NR2F2	chr16:71525875-71526399	K562	blood:	n/a	n/a
28	BACH1	chr16:71525975-71526280	H1-hESC	embryonic stem cell:	n/a	n/a
29	GATA1	chr16:71525872-71526224	PBDEFetal	blood:	n/a	n/a
30	MAFK	chr16:71526047-71526222	Hela-S3	cervix:	n/a	chr16:71526138-71526153
31	TRIM28	chr16:71525922-71526386	K562	blood:	n/a	n/a
32	PML	chr16:71525983-71526340	K562	blood:	n/a	n/a
33	MYC	chr16:71525995-71526423	K562	blood:	n/a	n/a
34	RCOR1	chr16:71525992-71526309	K562	blood:	n/a	n/a
35	IRF1	chr16:71525846-71526847	K562	blood:	n/a	n/a
36	CUX1	chr16:71525983-71526402	K562	blood:	n/a	n/a
37	TAL1	chr16:71525695-71527129	K562	blood:	n/a	n/a
38	ZNF384	chr16:71525829-71526259	K562	blood:	n/a	n/a
39	PML	chr16:71525889-71526354	K562	blood:	n/a	n/a
40	ATF3	chr16:71525986-71526257	K562	blood:	n/a	n/a
41	BACH1	chr16:71525946-71526612	K562	blood:	n/a	n/a
42	MAFK	chr16:71525959-71526321	HepG2	liver:	n/a	chr16:71526138-71526153
43	EP300	chr16:71525883-71526358	K562	blood:	n/a	n/a
44	CEBPD	chr16:71525912-71526327	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71525366..71527670-chr16:71529171..71530675,2	K562	blood:
2	chr16:71504965..71506764-chr16:71524563..71526143,2	K562	blood:
3	chr16:71516946..71520167-chr16:71520825..71527785,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261611	TF binding region
ZNF19	TF binding region
ENSG00000157429	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10500558	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11640165	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11641492	0.93[ASN][1000 genomes]
rs11643216	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11645711	0.86[AMR][1000 genomes]
rs11647749	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12446461	0.87[ASN][1000 genomes]
rs13331346	0.95[ASN][1000 genomes]
rs1609868	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1609869	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16973266	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs2004672	0.90[ASN][1000 genomes]
rs2070832	0.91[ASN][1000 genomes]
rs2288486	0.98[ASN][1000 genomes]
rs2288487	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2288488	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2303788	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28372238	0.92[ASN][1000 genomes]
rs310334	0.90[ASN][1000 genomes]
rs35373081	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35916432	0.86[ASN][1000 genomes]
rs36063092	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3813743	0.98[ASN][1000 genomes]
rs4149498	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4503795	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4620964	0.81[ASN][1000 genomes]
rs58452291	0.81[ASN][1000 genomes]
rs58719913	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7184543	0.93[ASN][1000 genomes]
rs7186241	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7187165	0.99[ASN][1000 genomes]
rs7187354	0.98[ASN][1000 genomes]
rs7188342	0.99[ASN][1000 genomes]
rs7199026	0.93[ASN][1000 genomes]
rs7199373	1.00[ASN][1000 genomes]
rs7200335	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7200431	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202662	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7202953	0.94[ASN][1000 genomes]
rs730470	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs732318	0.88[ASN][1000 genomes]
rs74026831	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74027246	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8044068	0.90[ASN][1000 genomes]
rs8044561	0.91[ASN][1000 genomes]
rs8051212	0.92[ASN][1000 genomes]
rs8053662	0.93[ASN][1000 genomes]
rs8058294	1.00[ASN][1000 genomes]
rs8058776	0.88[ASN][1000 genomes]
rs8061078	0.81[ASN][1000 genomes]
rs9302623	0.93[ASN][1000 genomes]
rs9926110	0.91[ASN][1000 genomes]
rs9928243	0.92[ASN][1000 genomes]
rs9933680	0.91[ASN][1000 genomes]
rs9935426	0.99[ASN][1000 genomes]
rs9936249	0.96[ASN][1000 genomes]
rs9940771	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71525200-71527200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr16:71525200-71527400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:71525400-71526800	Enhancers	Primary hematopoietic stem cells	blood
4	chr16:71525800-71527000	Flanking Active TSS	K562	blood

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