Variant report

Variant	rs8061078
Chromosome Location	chr16:71562748-71562749
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71556318..71559319-chr16:71561102..71564368,3	K562	blood:
2	chr16:71556262..71558190-chr16:71561391..71563610,2	MCF-7	breast:
3	chr16:71562630..71564970-chr16:71679393..71680971,2	K562	blood:

Variant related genes	Relation type
ENSG00000140835	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10500558	0.86[ASN][1000 genomes]
rs11640165	0.86[ASN][1000 genomes]
rs11641492	0.86[ASN][1000 genomes]
rs11643216	0.86[ASN][1000 genomes]
rs11647749	0.86[ASN][1000 genomes]
rs12446461	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13331346	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1609868	0.83[CHB][hapmap]
rs1609869	0.82[CHB][hapmap]
rs2004672	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2070832	0.91[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes]
rs2288486	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs2288487	0.94[CHB][hapmap]
rs2288488	0.81[ASN][1000 genomes]
rs2288489	1.00[YRI][hapmap]
rs2303788	0.82[CHB][hapmap]
rs2432524	0.82[CHB][hapmap]
rs28372238	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs310334	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35916432	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3813743	0.94[CHB][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4149498	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs4503795	0.81[ASN][1000 genomes]
rs4620964	0.92[CEU][hapmap];0.84[AMR][1000 genomes]
rs58134724	0.81[ASN][1000 genomes]
rs58719913	0.86[ASN][1000 genomes]
rs6499523	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs7184543	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs7186241	0.86[ASN][1000 genomes]
rs7187165	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs7187354	0.83[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7188342	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs7199026	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs7199373	0.81[ASN][1000 genomes]
rs7200335	0.82[ASN][1000 genomes]
rs7200431	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs7202662	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs7202953	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs730470	0.83[CHB][hapmap]
rs732318	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74026831	0.86[ASN][1000 genomes]
rs74027246	0.86[ASN][1000 genomes]
rs8044068	0.86[ASN][1000 genomes]
rs8044561	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8051212	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8053662	0.86[ASN][1000 genomes]
rs8058294	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs8058776	0.89[AMR][1000 genomes]
rs9302623	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9926110	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9928243	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs9933680	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs9935426	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs9936249	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9940771	0.84[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv906892	chr16:71526720-71570413	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71556000-71563200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr16:71560600-71565200	Weak transcription	Lung	lung
3	chr16:71560600-71583400	Weak transcription	Pancreas	Pancrea
4	chr16:71560800-71563400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:71560800-71565400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:71561000-71563000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:71561000-71582400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr16:71561200-71563200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr16:71561200-71576400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr16:71561400-71562800	Weak transcription	H1 Cell Line	embryonic stem cell

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