Variant report

Variant	rs7187165
Chromosome Location	chr16:71524543-71524544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr16:71524377-71524576	K562	blood:	n/a	n/a
2	MAFK	chr16:71524373-71524598	K562	blood:	n/a	n/a
3	BACH1	chr16:71524471-71524796	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71496289..71499159-chr16:71523372..71525496,2	K562	blood:
2	chr16:71517404..71519756-chr16:71521184..71524689,3	MCF-7	breast:
3	chr16:71515755..71518920-chr16:71520634..71524924,4	K562	blood:
4	chr16:71516946..71520167-chr16:71520825..71527785,6	MCF-7	breast:
5	chr16:71511822..71513455-chr16:71524047..71525825,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF19	TF binding region
ENSG00000261611	TF binding region
ENSG00000167377	Chromatin interaction
ENSG00000157429	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10500558	0.93[ASN][1000 genomes]
rs11640165	0.93[ASN][1000 genomes]
rs11641492	0.93[ASN][1000 genomes]
rs11643101	0.82[JPT][hapmap]
rs11643216	0.93[ASN][1000 genomes]
rs11644434	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs11647749	0.94[ASN][1000 genomes]
rs12446461	0.88[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs13331346	0.96[ASN][1000 genomes]
rs1609868	0.88[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1609869	0.88[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs16973266	0.82[CHB][hapmap]
rs172649	0.81[CHD][hapmap]
rs2004672	0.91[ASN][1000 genomes]
rs2070832	0.88[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2288486	0.85[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2288487	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2288488	0.98[ASN][1000 genomes]
rs2303788	0.88[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs2432524	0.88[CHB][hapmap]
rs28372238	0.93[ASN][1000 genomes]
rs310334	0.89[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs35373081	0.95[ASN][1000 genomes]
rs35916432	0.86[ASN][1000 genomes]
rs36063092	0.83[ASN][1000 genomes]
rs3813743	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.98[ASN][1000 genomes]
rs4149498	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4503795	0.93[ASN][1000 genomes]
rs4620964	0.82[ASN][1000 genomes]
rs58134724	0.99[ASN][1000 genomes]
rs58452291	0.82[ASN][1000 genomes]
rs58719913	0.93[ASN][1000 genomes]
rs6499523	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7184543	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7186241	0.94[ASN][1000 genomes]
rs7187354	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.99[ASN][1000 genomes]
rs7188342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199026	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7199373	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7200335	0.91[ASN][1000 genomes]
rs7200431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7202662	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7202953	0.95[ASN][1000 genomes]
rs730470	0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs732318	0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.87[ASN][1000 genomes]
rs74026831	0.94[ASN][1000 genomes]
rs74027246	0.93[ASN][1000 genomes]
rs8044068	0.91[ASN][1000 genomes]
rs8044561	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs8051212	0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs8053662	0.93[ASN][1000 genomes]
rs8058294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8058776	0.87[ASN][1000 genomes]
rs8061078	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs9302623	0.94[ASN][1000 genomes]
rs9926110	1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs9928243	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9933680	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs9935426	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936249	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs9940771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7187165	RANBP10	cis	parietal	SCAN
rs7187165	HYDIN	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71524200-71525800	Enhancers	K562	blood

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