Variant report

Variant	rs11644434
Chromosome Location	chr16:71460343-71460344
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71452691..71455669-chr16:71459394..71461176,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF23-3	chr16:71460064-71460367	ENSG00000261348.1

Variant related genes	Relation type
ENSG00000262120	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1105097	0.84[ASN][1000 genomes]
rs11643101	0.91[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11645711	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11861540	0.93[JPT][hapmap]
rs12446461	0.94[CHB][hapmap]
rs1609868	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs1609869	0.95[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes]
rs2070832	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs2288486	0.84[JPT][hapmap]
rs2288487	0.90[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2303788	0.95[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs3813743	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs3892120	0.96[ASN][1000 genomes]
rs4149498	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs4363868	0.89[JPT][hapmap]
rs4503795	0.80[EUR][1000 genomes]
rs4620964	0.85[ASN][1000 genomes]
rs6499523	0.86[CHB][hapmap]
rs7184543	0.81[CHB][hapmap]
rs7187165	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7187354	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7188342	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7192986	0.97[ASN][1000 genomes]
rs7199026	0.81[CHB][hapmap]
rs7200431	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs7202340	0.94[JPT][hapmap]
rs7202662	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs730470	0.95[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs732318	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs8044561	0.81[CHB][hapmap]
rs8051212	0.88[CHB][hapmap]
rs8058294	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9926110	0.81[CHB][hapmap]
rs9928243	0.81[CHB][hapmap]
rs9933680	0.81[CHB][hapmap]
rs9935426	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9936249	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9940771	0.83[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71457000-71461000	Weak transcription	Right Atrium	heart
2	chr16:71459200-71461200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr16:71459400-71460800	Active TSS	H1 Cell Line	embryonic stem cell
4	chr16:71459400-71460800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr16:71459400-71460800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr16:71459400-71461000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr16:71459600-71460400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr16:71459600-71460400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr16:71459600-71460400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr16:71459600-71460400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr16:71459600-71460400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr16:71459600-71460400	ZNF genes & repeats	Spleen	Spleen
13	chr16:71459600-71460400	Flanking Active TSS	HMEC	breast
14	chr16:71459600-71460800	Active TSS	A549	lung
15	chr16:71459600-71461000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:71459600-71461000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr16:71459800-71460400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr16:71459800-71460400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:71459800-71460400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr16:71459800-71460400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr16:71459800-71460400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr16:71459800-71460400	Active TSS	NHEK	skin
23	chr16:71459800-71460600	Active TSS	HepG2	liver
24	chr16:71459800-71460800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:71459800-71461000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr16:71459800-71461000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
27	chr16:71459800-71461000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr16:71459800-71461000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr16:71459800-71461400	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr16:71460000-71460400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr16:71460000-71460400	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
32	chr16:71460000-71460400	Bivalent/Poised TSS	Primary T helper cells fromperipheralblood	blood
33	chr16:71460000-71460400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr16:71460000-71460400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
35	chr16:71460000-71460400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
36	chr16:71460000-71460400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
37	chr16:71460000-71460400	Bivalent/Poised TSS	HSMM	muscle
38	chr16:71460000-71460400	Bivalent/Poised TSS	HUVEC	blood vessel
39	chr16:71460000-71460400	Active TSS	NH-A	brain
40	chr16:71460000-71460400	Bivalent/Poised TSS	Osteobl	bone
41	chr16:71460000-71460600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr16:71460000-71460600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr16:71460000-71460600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr16:71460000-71460600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
45	chr16:71460000-71460600	Bivalent/Poised TSS	NHLF	lung
46	chr16:71460000-71460800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr16:71460000-71460800	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr16:71460000-71461000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr16:71460000-71461000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:71460000-71461400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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