Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10852975	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11079174	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11079176	0.96[ASN][1000 genomes]
rs12051854	0.97[ASN][1000 genomes]
rs12051893	0.96[ASN][1000 genomes]
rs12936770	0.96[ASN][1000 genomes]
rs12937371	0.94[ASN][1000 genomes]
rs12937392	0.94[ASN][1000 genomes]
rs12937932	0.92[ASN][1000 genomes]
rs12939438	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12940283	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12943077	0.97[ASN][1000 genomes]
rs12945006	0.97[ASN][1000 genomes]
rs12946758	0.96[ASN][1000 genomes]
rs4312363	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4793796	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7207559	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7209034	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7211104	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7213973	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7220600	0.85[JPT][hapmap]
rs8070676	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9303369	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9899662	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9914970	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2100	chr17:53492380-54328516	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1062337	chr17:53510996-54161442	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv16382	chr17:53545954-53553610	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:53544400-53550000	Weak transcription	Placenta	Placenta
2	chr17:53544600-53551800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr17:53546600-53549800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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