Variant report
| Variant | rs7213973 |
|---|---|
| Chromosome Location | chr17:53545528-53545529 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MMD-3 | chr17:53545427-53545762 | ENSG00000261873.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10852975 | 0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11079174 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11079176 | 0.98[ASN][1000 genomes] |
| rs11651780 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12051854 | 0.99[ASN][1000 genomes] |
| rs12051893 | 0.98[ASN][1000 genomes] |
| rs12936770 | 0.98[ASN][1000 genomes] |
| rs12937371 | 0.95[ASN][1000 genomes] |
| rs12937392 | 0.95[ASN][1000 genomes] |
| rs12937932 | 0.94[ASN][1000 genomes] |
| rs12939438 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12940283 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12943077 | 0.99[ASN][1000 genomes] |
| rs12945006 | 0.99[ASN][1000 genomes] |
| rs12946758 | 0.98[ASN][1000 genomes] |
| rs4312363 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4793796 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7207559 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7209034 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7211104 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7220600 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs8070676 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9303369 | 0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9899662 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9914970 | 0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv2100 | chr17:53492380-54328516 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv1062337 | chr17:53510996-54161442 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:53544400-53550000 | Weak transcription | Placenta | Placenta |
| 2 | chr17:53544600-53551800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
