Variant report
| Variant | rs12939438 |
|---|---|
| Chromosome Location | chr17:53524842-53524843 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:53499400-53528000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr17:53522200-53525200 | Enhancers | Liver | Liver |
| 3 | chr17:53522400-53525800 | Weak transcription | Placenta | Placenta |
| 4 | chr17:53522400-53527800 | Weak transcription | Primary hematopoietic stem cells | blood |
| 5 | chr17:53522600-53525800 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 6 | chr17:53522600-53527000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 7 | chr17:53522600-53529600 | Weak transcription | HMEC | breast |
| 8 | chr17:53522800-53525800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 9 | chr17:53522800-53526000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 10 | chr17:53522800-53526000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 11 | chr17:53522800-53526000 | Weak transcription | K562 | blood |
| 12 | chr17:53522800-53526000 | Weak transcription | Osteobl | bone |
| 13 | chr17:53522800-53526200 | Weak transcription | NHLF | lung |
| 14 | chr17:53522800-53526800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 15 | chr17:53522800-53529600 | Weak transcription | NH-A | brain |
| 16 | chr17:53522800-53531200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 17 | chr17:53523000-53528000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 18 | chr17:53523200-53526000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 19 | chr17:53523600-53528000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 20 | chr17:53524000-53525200 | Enhancers | Duodenum Mucosa | Duodenum |
| 21 | chr17:53524000-53534000 | Enhancers | HepG2 | liver |
| 22 | chr17:53524200-53526000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 23 | chr17:53524200-53526200 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 24 | chr17:53524200-53527000 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 25 | chr17:53524200-53529600 | Weak transcription | GM12878-XiMat | blood |
| 26 | chr17:53524400-53525800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 27 | chr17:53524400-53526000 | Weak transcription | Adipose Nuclei | Adipose |
| 28 | chr17:53524400-53526000 | Weak transcription | Colon Smooth Muscle | Colon |
| 29 | chr17:53524400-53527400 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 30 | chr17:53524400-53527600 | Weak transcription | Stomach Smooth Muscle | stomach |
| 31 | chr17:53524400-53528000 | Weak transcription | Rectal Smooth Muscle | rectum |
| 32 | chr17:53524600-53525000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 33 | chr17:53524600-53525800 | Weak transcription | Hela-S3 | cervix |
| 34 | chr17:53524600-53526000 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 35 | chr17:53524600-53526000 | Weak transcription | Fetal Lung | lung |
| 36 | chr17:53524600-53526000 | Weak transcription | A549 | lung |
| 37 | chr17:53524600-53526200 | Weak transcription | Fetal Intestine Small | intestine |
| 38 | chr17:53524600-53527000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 39 | chr17:53524600-53527000 | Weak transcription | Small Intestine | intestine |
| 40 | chr17:53524600-53527400 | Weak transcription | Fetal Intestine Large | intestine |
