Variant report

Variant	rs11659010
Chromosome Location	chr17:37601117-37601118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37599588..37603682-chr17:37603937..37608960,7	K562	blood:

Variant related genes	Relation type
ENSG00000125686	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10445305	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10445306	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10445307	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078899	0.80[ASN][1000 genomes]
rs11078900	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11078901	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11078902	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11078903	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11078904	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11650081	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11650146	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11651089	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11657899	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11867312	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11868030	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11868133	0.81[ASN][1000 genomes]
rs11870631	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12150493	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12452509	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12452682	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12452880	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12936646	0.81[EUR][1000 genomes]
rs12937703	0.81[ASN][1000 genomes]
rs12938268	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12942352	0.80[EUR][1000 genomes]
rs12942360	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12943928	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12947600	0.81[AFR][1000 genomes]
rs12947620	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12948560	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12948906	0.81[EUR][1000 genomes]
rs12950666	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34363096	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34627893	0.82[ASN][1000 genomes]
rs34957982	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35112839	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35497503	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35667594	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36064019	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4286140	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4390625	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4410117	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4462633	0.80[AFR][1000 genomes]
rs4511574	0.81[EUR][1000 genomes]
rs4794807	0.81[EUR][1000 genomes]
rs4794809	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4794810	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4795357	0.81[EUR][1000 genomes]
rs4795359	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4795361	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4795362	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4795369	0.81[ASN][1000 genomes]
rs4795371	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55722796	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57448077	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61161659	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62075056	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6503507	0.81[EUR][1000 genomes]
rs6503515	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6503517	0.81[EUR][1000 genomes]
rs68178216	0.80[EUR][1000 genomes]
rs7212715	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7212868	0.81[AFR][1000 genomes]
rs7218944	0.84[ASN][1000 genomes]
rs7219014	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7219294	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7223438	0.80[EUR][1000 genomes]
rs7223896	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7405667	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7501488	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8072351	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8077104	0.81[EUR][1000 genomes]
rs8079303	0.81[EUR][1000 genomes]
rs8081780	0.81[EUR][1000 genomes]
rs9898773	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
11	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11659010	CRKRS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37559000-37606600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr17:37560800-37605000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:37560800-37605400	Strong transcription	Fetal Thymus	thymus
4	chr17:37560800-37605600	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:37561000-37604800	Strong transcription	Fetal Muscle Trunk	muscle
6	chr17:37561000-37604800	Strong transcription	Placenta	Placenta
7	chr17:37561000-37605200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:37561000-37605400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:37561200-37604400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr17:37561200-37604600	Strong transcription	Liver	Liver
11	chr17:37561200-37605000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr17:37561200-37605200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr17:37561400-37604800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr17:37561400-37604800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr17:37561400-37605000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr17:37561600-37604600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr17:37561600-37605600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr17:37561800-37604400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr17:37562000-37604400	Strong transcription	Adipose Nuclei	Adipose
20	chr17:37562000-37604600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr17:37562000-37604600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr17:37562200-37604200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr17:37562200-37604400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:37562200-37604600	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr17:37562400-37604200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr17:37562400-37604600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr17:37562400-37604600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr17:37562600-37604200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr17:37563000-37604600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr17:37563000-37604800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr17:37563800-37605600	Strong transcription	Fetal Stomach	stomach
32	chr17:37563800-37606000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr17:37564000-37604400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr17:37564000-37605200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr17:37564000-37605400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr17:37566800-37606400	Weak transcription	Stomach Mucosa	stomach
37	chr17:37568600-37604200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr17:37568800-37604200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr17:37569000-37605200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr17:37571600-37606600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr17:37577800-37604800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr17:37578600-37604600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr17:37578800-37604000	Strong transcription	Dnd41	blood
44	chr17:37579000-37604000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr17:37579200-37604600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr17:37579200-37605000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr17:37579400-37605600	Strong transcription	Fetal Intestine Large	intestine
48	chr17:37582400-37603000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr17:37584200-37606600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr17:37588200-37606400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links