Variant report

Variant	rs4390625
Chromosome Location	chr17:37620347-37620348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37399360..37401655-chr17:37617995..37620888,2	K562	blood:
2	chr17:37618970..37621039-chr17:37622079..37624596,3	MCF-7	breast:
3	chr17:37556913..37559429-chr17:37617747..37620632,2	K562	blood:
4	chr17:37604386..37611889-chr17:37616048..37620931,25	K562	blood:
5	chr17:37558046..37560513-chr17:37618959..37620951,2	MCF-7	breast:
6	chr17:37618876..37620514-chr17:37643211..37645194,2	K562	blood:
7	chr17:37604313..37610125-chr17:37615155..37621784,15	MCF-7	breast:
8	chr17:37604291..37611614-chr17:37614953..37621274,26	K562	blood:
9	chr17:37616556..37619121-chr17:37619599..37622081,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108306	Chromatin interaction
ENSG00000167258	Chromatin interaction
ENSG00000265460	Chromatin interaction
ENSG00000125686	Chromatin interaction
ENSG00000266469	Chromatin interaction

Extended variants
information (count: 242 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:230)

rs_ID	r²[population]
rs10221223	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10445305	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10445306	0.85[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10445307	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10491128	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10491129	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs10775391	0.84[ASN][1000 genomes]
rs1077715	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10852933	0.80[ASN][1000 genomes]
rs11078898	0.85[CEU][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078900	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11078901	0.90[CEU][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078902	0.81[CEU][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11078903	0.81[CEU][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11078904	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078905	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078906	0.95[CEU][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078907	0.90[CEU][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078910	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078911	0.86[ASN][1000 genomes]
rs11078912	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078913	0.86[ASN][1000 genomes]
rs11650081	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11650146	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11651089	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11654018	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap]
rs11655531	0.80[ASN][1000 genomes]
rs11657899	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11658678	0.81[CEU][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs11659010	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11867312	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11868029	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11868030	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11868133	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11869109	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11869259	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11869323	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11870631	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12150047	0.85[CHD][hapmap];0.86[ASN][1000 genomes]
rs12150493	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12449852	0.85[ASN][1000 genomes]
rs12450559	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap]
rs12451586	0.86[AMR][1000 genomes]
rs12452509	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12452682	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12452880	0.85[CEU][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12453397	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12600625	0.88[ASN][1000 genomes]
rs12600751	0.85[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12936646	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12936996	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12937703	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12938099	0.86[ASN][1000 genomes]
rs12938268	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12939831	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12942352	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12942360	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12943928	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12947281	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12947506	0.83[CHD][hapmap]
rs12947600	0.86[AFR][1000 genomes]
rs12947620	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12948560	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12948906	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12950666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12952384	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13341996	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2018026	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2024073	0.82[EUR][1000 genomes]
rs2061338	0.83[ASW][hapmap];0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]
rs2303316	0.85[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap]
rs2338797	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2338798	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2338800	0.94[ASW][hapmap];0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2338801	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34363096	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34432983	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34597616	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34627893	0.81[EUR][1000 genomes]
rs34957982	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35112839	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35285898	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35497503	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35546703	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35667594	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36064019	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3889368	0.84[ASN][1000 genomes]
rs4239222	0.85[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.80[ASN][1000 genomes]
rs4286140	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4410117	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4462633	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4511574	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4516267	0.85[CHD][hapmap]
rs4794807	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4794809	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4794810	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4794813	0.86[ASN][1000 genomes]
rs4794814	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs4795355	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs4795356	0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4795357	0.85[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4795358	0.83[ASN][1000 genomes]
rs4795359	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4795361	0.85[EUR][1000 genomes]
rs4795362	0.84[EUR][1000 genomes]
rs4795364	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4795367	0.86[ASN][1000 genomes]
rs4795369	0.92[CHD][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4795371	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4795376	0.86[ASN][1000 genomes]
rs4795377	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4795379	0.85[CHD][hapmap]
rs4795381	0.80[ASN][1000 genomes]
rs55660616	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55722796	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57399933	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57448077	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs583980	0.82[EUR][1000 genomes]
rs585961	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs588193	0.83[ASW][hapmap];0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap]
rs590051	0.85[CHD][hapmap]
rs597069	0.85[CHD][hapmap]
rs600010	0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap]
rs602688	0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap]
rs61161659	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs612209	0.81[EUR][1000 genomes]
rs620686	0.85[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs62075056	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62077463	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62077464	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs632202	0.81[CEU][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap]
rs634365	0.83[ASW][hapmap];0.85[CEU][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap]
rs638201	0.82[EUR][1000 genomes]
rs644173	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap];0.92[TSI][hapmap]
rs650106	0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs6503500	0.85[CHD][hapmap]
rs6503502	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6503503	0.85[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6503506	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6503507	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6503513	0.94[ASW][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.90[YRI][hapmap];0.91[ASN][1000 genomes]
rs6503515	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6503517	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503518	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs667239	0.85[CHD][hapmap]
rs676882	0.82[CHD][hapmap]
rs679995	0.81[EUR][1000 genomes]
rs68178216	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs683948	0.81[EUR][1000 genomes]
rs7208252	0.83[ASN][1000 genomes]
rs7208274	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7208487	0.82[CHD][hapmap]
rs7208714	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7210488	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7212621	0.82[CHD][hapmap]
rs7212715	0.90[AFR][1000 genomes]
rs7212868	0.86[AFR][1000 genomes]
rs7216086	0.85[CEU][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap]
rs7218074	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7218484	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7218670	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7219014	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7219294	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7220650	0.94[ASW][hapmap];0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7221875	0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7222252	0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap]
rs7223331	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7223438	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7223896	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7225096	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73293051	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7359658	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7405667	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7406928	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7501488	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7503069	0.85[CEU][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs7503377	0.83[CHD][hapmap]
rs7503514	0.86[ASN][1000 genomes]
rs7503705	0.94[ASW][hapmap];0.85[CEU][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs801419	0.81[EUR][1000 genomes]
rs801420	0.81[EUR][1000 genomes]
rs801426	0.83[ASW][hapmap];0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];0.92[TSI][hapmap]
rs8065879	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8065963	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8066704	0.85[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs8067302	0.84[ASN][1000 genomes]
rs8067511	0.86[ASN][1000 genomes]
rs8067884	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8067948	0.84[ASN][1000 genomes]
rs8068427	0.83[ASN][1000 genomes]
rs8069074	0.85[CHD][hapmap]
rs8069451	0.88[ASW][hapmap];0.80[CEU][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs8070695	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8072297	0.81[ASN][1000 genomes]
rs8072351	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8073907	0.85[CHD][hapmap]
rs8074276	0.84[ASN][1000 genomes]
rs8074855	0.86[ASN][1000 genomes]
rs8076494	0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8076546	0.85[CEU][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8077104	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8079303	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8079560	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8079590	0.83[ASW][hapmap];0.85[CEU][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.95[TSI][hapmap]
rs8081033	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8081220	0.82[EUR][1000 genomes]
rs8081780	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9646419	0.85[CHD][hapmap];0.86[ASN][1000 genomes]
rs9892055	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9892675	0.90[ASN][1000 genomes]
rs9893735	0.85[CHD][hapmap]
rs9894500	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9894586	0.85[CEU][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9894864	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9896913	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9898170	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9898773	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9901219	0.91[ASN][1000 genomes]
rs9903363	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9904334	0.83[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs9904919	0.85[CEU][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9905432	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9905617	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9906612	0.85[CHD][hapmap];0.80[ASN][1000 genomes]
rs9908131	0.82[CHD][hapmap]
rs9908760	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9909064	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9913320	0.81[EUR][1000 genomes]
rs9916302	0.81[ASN][1000 genomes]
rs9944411	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
11	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4390625	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs4390625	C17orf37	cis	uninvolved skin	skin_eQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37616800-37620400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:37616800-37620400	Active TSS	Stomach Smooth Muscle	stomach
3	chr17:37617000-37620400	Active TSS	Fetal Thymus	thymus
4	chr17:37617000-37620400	Active TSS	Psoas Muscle	Psoas
5	chr17:37617000-37620600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:37617000-37620600	Active TSS	NHDF-Ad	bronchial
7	chr17:37617000-37621000	Active TSS	Colonic Mucosa	Colon
8	chr17:37617000-37621000	Active TSS	Fetal Intestine Small	intestine
9	chr17:37617000-37621200	Active TSS	Fetal Intestine Large	intestine
10	chr17:37617200-37620400	Active TSS	Aorta	Aorta
11	chr17:37617200-37620600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr17:37617200-37620600	Active TSS	Fetal Brain Female	brain
13	chr17:37617200-37620600	Active TSS	Left Ventricle	heart
14	chr17:37617200-37620800	Active TSS	H1 Cell Line	embryonic stem cell
15	chr17:37617200-37620800	Active TSS	Right Ventricle	heart
16	chr17:37617200-37621000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr17:37617200-37621000	Active TSS	Muscle Satellite Cultured Cells	--
18	chr17:37617200-37621000	Active TSS	HSMMtube	muscle
19	chr17:37617200-37621200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr17:37617200-37621200	Active TSS	Ovary	ovary
21	chr17:37617200-37621200	Active TSS	HMEC	breast
22	chr17:37617200-37621400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr17:37617200-37621400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr17:37617200-37621800	Active TSS	NHLF	lung
25	chr17:37617200-37622000	Active TSS	GM12878-XiMat	blood
26	chr17:37617200-37622200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr17:37617200-37622200	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr17:37617200-37622400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr17:37617400-37620400	Active TSS	Fetal Muscle Trunk	muscle
30	chr17:37617400-37620400	Active TSS	Fetal Muscle Leg	muscle
31	chr17:37617600-37620600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:37617800-37620400	Bivalent/Poised TSS	HepG2	liver
33	chr17:37618200-37621000	Active TSS	Right Atrium	heart
34	chr17:37618200-37621400	Active TSS	Brain Germinal Matrix	brain
35	chr17:37618400-37620600	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr17:37618400-37621000	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr17:37618400-37621200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr17:37618400-37621400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr17:37618600-37621200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
40	chr17:37618800-37620400	Transcr. at gene 5' and 3'	Dnd41	blood
41	chr17:37618800-37620800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr17:37618800-37621200	Flanking Active TSS	Liver	Liver
43	chr17:37618800-37621200	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr17:37618800-37621200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr17:37618800-37621600	Flanking Active TSS	Primary T cells from cord blood	blood
46	chr17:37618800-37621600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr17:37619000-37620400	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr17:37619000-37621200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr17:37619000-37621400	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr17:37619200-37620400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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Variant report

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