Variant report

Variant	rs8073907
Chromosome Location	chr17:37424149-37424150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37386529..37388946-chr17:37423466..37425656,2	K562	blood:

Extended variants
information (count: 174 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs10221223	0.82[ASN][1000 genomes]
rs10432030	0.87[ASN][1000 genomes]
rs10432031	0.87[ASN][1000 genomes]
rs10445306	0.87[CHB][hapmap]
rs10491128	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs10491129	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs11078893	0.88[CHB][hapmap]
rs11078894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11078895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11078896	0.89[ASN][1000 genomes]
rs11078897	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs11078898	0.88[CHB][hapmap]
rs11655972	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11871813	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12150047	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs12452509	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs12452880	0.88[CHB][hapmap]
rs12600751	0.88[CHB][hapmap]
rs12938099	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12947620	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs12950186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13341996	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs1966915	0.89[ASN][1000 genomes]
rs1966916	0.89[ASN][1000 genomes]
rs1971663	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2024073	0.87[ASN][1000 genomes]
rs2061338	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs2061342	0.88[ASN][1000 genomes]
rs2100651	0.87[ASN][1000 genomes]
rs2168785	0.89[ASN][1000 genomes]
rs2302073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2338755	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs2338795	0.89[ASN][1000 genomes]
rs2338799	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2338800	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes]
rs2338801	0.81[ASN][1000 genomes]
rs28482878	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2879258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2879259	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28799952	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33933929	0.88[ASN][1000 genomes]
rs34473775	0.85[ASN][1000 genomes]
rs3744348	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs3744349	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3964723	0.88[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs4287601	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4325601	0.88[ASN][1000 genomes]
rs4390625	0.85[CHD][hapmap]
rs4511574	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs4516267	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4794808	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4795355	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs4795356	0.88[CHB][hapmap];0.92[CHD][hapmap]
rs4795357	0.88[CHB][hapmap]
rs4795358	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4795369	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs55689507	0.89[ASN][1000 genomes]
rs57933226	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs582088	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs582176	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs583980	0.84[ASN][1000 genomes]
rs584377	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs585961	0.88[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs587343	0.87[ASN][1000 genomes]
rs587880	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs588193	0.88[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs590051	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs593480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs594794	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs597069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs600010	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs602282	0.88[ASN][1000 genomes]
rs602688	0.88[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs612209	0.84[ASN][1000 genomes]
rs61368704	0.81[EUR][1000 genomes]
rs620686	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs632202	0.88[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs632606	0.85[ASN][1000 genomes]
rs634365	0.82[CHB][hapmap];0.88[CHD][hapmap];0.85[ASN][1000 genomes]
rs638201	0.87[ASN][1000 genomes]
rs644173	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs649180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs650106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6503500	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6503502	0.82[ASN][1000 genomes]
rs6503503	0.88[CHB][hapmap]
rs6503504	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6503507	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs6503513	0.85[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap]
rs651827	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs665413	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs667193	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs667239	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs676882	0.81[ASW][hapmap];0.91[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap]
rs677888	0.87[ASN][1000 genomes]
rs679995	0.87[ASN][1000 genomes]
rs683948	0.87[ASN][1000 genomes]
rs7208252	1.00[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs7208487	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7212621	0.93[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7215983	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7218484	0.81[ASN][1000 genomes]
rs7218670	0.82[ASN][1000 genomes]
rs7220650	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes]
rs7221117	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7221875	0.88[CHB][hapmap]
rs7222252	0.87[CHB][hapmap];0.92[CHD][hapmap]
rs7223331	0.82[ASN][1000 genomes]
rs7223438	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs7359658	0.81[ASN][1000 genomes]
rs7501488	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs7503081	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs752314	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs755500	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs801417	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs801418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs801419	0.87[ASN][1000 genomes]
rs801420	0.87[ASN][1000 genomes]
rs801426	0.88[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs801427	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs801429	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs801430	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8066704	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs8067302	0.82[ASN][1000 genomes]
rs8067948	0.82[ASN][1000 genomes]
rs8069451	0.90[CHD][hapmap]
rs8070695	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes]
rs8071300	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8073511	0.84[ASN][1000 genomes]
rs8076462	0.88[CHB][hapmap]
rs8076494	0.88[CHB][hapmap];0.92[CHD][hapmap]
rs8076546	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs8078599	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8079355	0.84[ASN][1000 genomes]
rs8079560	0.82[ASN][1000 genomes]
rs8079590	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs8079662	0.89[ASN][1000 genomes]
rs8081033	0.81[ASN][1000 genomes]
rs8081220	0.87[ASN][1000 genomes]
rs8081338	0.89[ASN][1000 genomes]
rs9646419	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs9747342	0.87[ASN][1000 genomes]
rs9890198	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9891892	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9892055	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs9893735	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9894586	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs9894864	0.81[ASN][1000 genomes]
rs9899069	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9903363	0.82[ASN][1000 genomes]
rs9904334	0.88[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs9905617	0.82[ASN][1000 genomes]
rs9906612	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9908131	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9908760	0.82[ASN][1000 genomes]
rs9909064	0.82[ASN][1000 genomes]
rs9909304	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9912212	0.84[ASN][1000 genomes]
rs9912310	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9913320	0.85[ASN][1000 genomes]
rs9944411	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes]
rs9944459	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
9	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
12	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs8073907	SLFN14	cis	parietal	SCAN
rs8073907	SPACA3	cis	parietal	SCAN
rs8073907	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs8073907	MYO1D	cis	parietal	SCAN
rs8073907	GSDMA	cis	parietal	SCAN
rs8073907	PGAP3	cis	Thyroid	GTEx
rs8073907	CCL4	cis	cerebellum	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37401000-37426000	Weak transcription	NHLF	lung
2	chr17:37401000-37433000	Weak transcription	Fetal Heart	heart
3	chr17:37401000-37437000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr17:37401400-37437400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr17:37405000-37437000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:37406800-37425400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr17:37407200-37439200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:37407600-37427400	Strong transcription	Placenta	Placenta
9	chr17:37407800-37431400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr17:37408000-37425400	Strong transcription	Fetal Lung	lung
11	chr17:37408000-37427200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr17:37408000-37440200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr17:37408000-37441600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:37408000-37463000	Weak transcription	Small Intestine	intestine
15	chr17:37408200-37427200	Strong transcription	Primary T cells from cord blood	blood
16	chr17:37408200-37442400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr17:37408400-37437400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr17:37409000-37426800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr17:37409000-37432800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr17:37409000-37438800	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr17:37409200-37431600	Strong transcription	Fetal Thymus	thymus
22	chr17:37409400-37437400	Weak transcription	HUVEC	blood vessel
23	chr17:37409800-37437400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr17:37409800-37464000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr17:37410000-37437200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:37411600-37437400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr17:37412200-37427400	Strong transcription	Stomach Smooth Muscle	stomach
28	chr17:37412800-37427000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr17:37413600-37431600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr17:37413800-37426600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:37414000-37425400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr17:37414000-37427000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr17:37414400-37432000	Strong transcription	Fetal Stomach	stomach
34	chr17:37415000-37443600	Weak transcription	Psoas Muscle	Psoas
35	chr17:37415200-37427600	Strong transcription	Liver	Liver
36	chr17:37415200-37433800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr17:37415800-37425200	Strong transcription	Brain Hippocampus Middle	brain
38	chr17:37415800-37426800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr17:37416400-37427000	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr17:37416800-37427600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr17:37417000-37425200	Strong transcription	Brain Angular Gyrus	brain
42	chr17:37417000-37427000	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr17:37417400-37458600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr17:37417600-37437400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr17:37417600-37460800	Weak transcription	Fetal Brain Male	brain
46	chr17:37417800-37424600	Weak transcription	Pancreas	Pancrea
47	chr17:37417800-37433200	Weak transcription	GM12878-XiMat	blood
48	chr17:37417800-37437000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr17:37418000-37424400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr17:37418000-37424600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links