Variant report

Variant	rs2061342
Chromosome Location	chr17:37405657-37405658
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37365401..37368145-chr17:37404465..37407253,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPL19-3	chr17:37401829-37406318	NONHSAT053433

Extended variants
information (count: 201 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs10221223	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10432030	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10432031	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10445306	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10491128	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10491129	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11078893	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078894	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs11078895	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs11078896	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11078897	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11078898	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11655972	0.89[ASN][1000 genomes]
rs11867312	0.81[EUR][1000 genomes]
rs11869109	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11869259	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11869323	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12150047	0.88[CHD][hapmap]
rs12150493	0.83[ASN][1000 genomes]
rs12452509	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12452880	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12600625	0.84[ASN][1000 genomes]
rs12600751	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12937703	0.81[ASN][1000 genomes]
rs12938268	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12947620	0.84[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs12950186	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs13341996	0.82[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1966915	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1966916	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024073	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2061338	0.88[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2100651	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2168785	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2302073	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs2338755	0.88[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2338756	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2338795	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2338797	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2338798	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2338799	0.81[CHB][hapmap]
rs2338800	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2338801	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2879258	0.82[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs2879259	0.87[ASN][1000 genomes]
rs33933929	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34432983	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34473775	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34597616	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35285898	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35546703	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35667594	0.80[EUR][1000 genomes]
rs36064019	0.81[ASN][1000 genomes]
rs3744348	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3744349	0.81[ASN][1000 genomes]
rs3964723	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4325601	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4375688	0.81[ASN][1000 genomes]
rs4410117	0.83[ASN][1000 genomes]
rs4511574	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4516267	0.82[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs4794807	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795355	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4795356	0.82[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795357	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4795359	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4795364	0.82[ASN][1000 genomes]
rs55689507	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57399933	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57933226	0.86[ASN][1000 genomes]
rs582088	0.87[ASN][1000 genomes]
rs582176	0.82[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs583980	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs584377	0.84[ASN][1000 genomes]
rs585961	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs587343	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs587880	0.87[ASN][1000 genomes]
rs588193	0.88[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs590051	0.82[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs593480	0.85[CHB][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594794	0.87[ASN][1000 genomes]
rs597069	0.82[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs600010	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs602282	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs602688	0.94[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs612209	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs620686	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62074994	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs632202	0.94[ASW][hapmap];0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs632606	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs634365	0.88[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs638201	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs644173	0.94[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs649180	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs650106	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6503500	0.82[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes]
rs6503501	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6503502	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6503503	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6503506	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6503507	0.82[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6503513	0.94[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[ASN][1000 genomes]
rs651827	0.87[ASN][1000 genomes]
rs665413	0.84[ASN][1000 genomes]
rs667193	0.84[ASN][1000 genomes]
rs667239	0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs676882	0.90[CHD][hapmap]
rs677888	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs679995	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68178216	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs683948	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7208252	0.82[CHD][hapmap]
rs7208274	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7208487	0.90[CHD][hapmap]
rs7208714	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7210488	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7212621	0.90[CHD][hapmap]
rs7215889	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7218074	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7218484	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7218670	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7220650	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7221875	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7222252	0.94[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7223331	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7223438	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73293051	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7359658	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7405667	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7501488	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7503081	0.82[ASN][1000 genomes]
rs752314	0.88[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs755500	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs801417	0.83[ASN][1000 genomes]
rs801418	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs801419	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs801420	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs801426	0.88[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs801427	0.87[CHD][hapmap];0.85[ASN][1000 genomes]
rs801429	0.85[ASN][1000 genomes]
rs8065879	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8066704	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8067302	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8067948	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8068427	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8069451	0.83[ASW][hapmap];0.90[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[YRI][hapmap];0.90[EUR][1000 genomes]
rs8070695	0.94[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8072297	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8072351	0.83[ASN][1000 genomes]
rs8073907	0.82[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs8076462	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8076494	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8076546	0.94[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8077104	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8079303	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8079355	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8079560	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8079590	0.88[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8079662	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8081033	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8081220	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8081338	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs883544	0.82[CHB][hapmap]
rs9646419	0.88[CHD][hapmap]
rs9747342	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9890198	0.87[ASN][1000 genomes]
rs9892055	0.82[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9892675	0.86[ASN][1000 genomes]
rs9893735	0.82[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs9894500	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9894586	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9894864	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9896913	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9898170	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9898773	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9901219	0.85[ASN][1000 genomes]
rs9903363	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9904334	0.88[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9904919	0.95[CEU][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9905432	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9905617	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9906612	0.87[CHD][hapmap]
rs9908131	0.90[CHD][hapmap]
rs9908760	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9909064	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9913320	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9916302	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9944411	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9944459	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv908203	chr17:37327165-37405657	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
11	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
12	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs2061342	CCL4	cis	cerebellum	SCAN
rs2061342	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs2061342	PGAP3	cis	cerebellum	SCAN
rs2061342	RAD51L3	cis	cerebellum	SCAN
rs2061342	PIGW	cis	parietal	SCAN
rs2061342	SLFN14	cis	parietal	SCAN
rs2061342	NEUROD2	cis	parietal	SCAN
rs2061342	PGAP3	cis	Heart Left Ventricle	GTEx
rs2061342	DHRS11	cis	cerebellum	SCAN
rs2061342	PGAP3	cis	Thyroid	GTEx

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37395000-37413000	Weak transcription	HSMMtube	muscle
2	chr17:37395000-37414600	Weak transcription	Psoas Muscle	Psoas
3	chr17:37395200-37409000	Weak transcription	Brain Anterior Caudate	brain
4	chr17:37395200-37409200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:37395200-37417000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr17:37396000-37409200	Weak transcription	Pancreas	Pancrea
7	chr17:37396200-37406000	Weak transcription	Right Atrium	heart
8	chr17:37396400-37410200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr17:37396400-37416400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:37400800-37410600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:37401000-37407000	Weak transcription	Fetal Stomach	stomach
12	chr17:37401000-37407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr17:37401000-37407800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr17:37401000-37408000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:37401000-37408000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr17:37401000-37408000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr17:37401000-37408200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr17:37401000-37408400	Weak transcription	Fetal Intestine Large	intestine
19	chr17:37401000-37408600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr17:37401000-37409000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr17:37401000-37409000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr17:37401000-37409200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr17:37401000-37409200	Weak transcription	Brain Hippocampus Middle	brain
24	chr17:37401000-37409200	Weak transcription	Brain Substantia Nigra	brain
25	chr17:37401000-37409200	Weak transcription	Right Ventricle	heart
26	chr17:37401000-37409400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr17:37401000-37413400	Weak transcription	HSMM	muscle
28	chr17:37401000-37414200	Weak transcription	Fetal Brain Male	brain
29	chr17:37401000-37414200	Weak transcription	NHDF-Ad	bronchial
30	chr17:37401000-37426000	Weak transcription	NHLF	lung
31	chr17:37401000-37433000	Weak transcription	Fetal Heart	heart
32	chr17:37401000-37437000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr17:37401200-37408000	Weak transcription	Fetal Lung	lung
34	chr17:37401200-37408200	Weak transcription	Primary T cells from cord blood	blood
35	chr17:37401200-37408200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr17:37401200-37408400	Weak transcription	Fetal Brain Female	brain
37	chr17:37401200-37409000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr17:37401200-37409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr17:37401200-37409000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr17:37401200-37409200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr17:37401200-37409200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr17:37401200-37409200	Weak transcription	Fetal Thymus	thymus
43	chr17:37401200-37409200	Weak transcription	Lung	lung
44	chr17:37401200-37409200	Weak transcription	Ovary	ovary
45	chr17:37401200-37409200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr17:37401200-37409200	Weak transcription	Spleen	Spleen
47	chr17:37401200-37409200	Weak transcription	Dnd41	blood
48	chr17:37401200-37409200	Weak transcription	GM12878-XiMat	blood
49	chr17:37401200-37412800	Weak transcription	Colon Smooth Muscle	Colon
50	chr17:37401200-37414000	Weak transcription	Fetal Kidney	kidney

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