Variant report

Variant	rs9904919
Chromosome Location	chr17:37556431-37556432
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr17:37556356-37559228	IMR90	lung:	n/a	chr17:37556729-37556740 chr17:37558725-37558735
2	HCFC1	chr17:37555896-37558341	Hela-S3	cervix:	n/a	n/a
3	MAFK	chr17:37556096-37556486	K562	blood:	n/a	chr17:37556221-37556236 chr17:37556221-37556237 chr17:37556224-37556238 chr17:37556225-37556236
4	JUN	chr17:37556406-37559413	K562	blood:	n/a	chr17:37558887-37558896 chr17:37558917-37558930 chr17:37558607-37558616 chr17:37558921-37558930
5	MAFK	chr17:37555843-37556458	Hela-S3	cervix:	n/a	chr17:37556221-37556236 chr17:37556221-37556237 chr17:37556224-37556238 chr17:37556225-37556236

No.	Distal block	Cell Line	Cell type
1	chr17:37352517..37355466-chr17:37556188..37557731,2	K562	blood:
2	chr17:36981303..36983038-chr17:37555854..37557986,2	K562	blood:
3	chr17:37553969..37556475-chr17:37564742..37566292,2	MCF-7	breast:
4	chr17:37526230..37528190-chr17:37555834..37557759,2	K562	blood:

Variant related genes	Relation type
ENSG00000266469	TF binding region
ENSG00000108296	Chromatin interaction
ENSG00000263791	Chromatin interaction
ENSG00000067191	Chromatin interaction

Extended variants
information (count: 241 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:229)

rs_ID	r²[population]
rs10221223	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10432030	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10432031	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10445306	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10445307	0.86[ASN][1000 genomes]
rs10491128	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10491129	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078893	1.00[CEU][hapmap]
rs11078896	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078897	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078898	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11078900	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078901	0.95[CEU][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11078902	0.86[CEU][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078903	0.86[CEU][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078904	0.86[ASN][1000 genomes]
rs11078906	0.95[CEU][hapmap]
rs11078907	0.95[CEU][hapmap]
rs11650081	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11650146	0.86[EUR][1000 genomes]
rs11651089	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11654018	1.00[CEU][hapmap]
rs11657899	0.95[CEU][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11658678	0.95[CEU][hapmap]
rs11867312	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11868029	0.86[ASN][1000 genomes]
rs11868030	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11868133	0.92[ASN][1000 genomes]
rs11869109	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11869259	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11869323	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11870631	0.87[ASN][1000 genomes]
rs11870713	0.82[AMR][1000 genomes]
rs11871813	0.82[ASN][1000 genomes]
rs12150047	0.81[ASN][1000 genomes]
rs12150493	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12450559	1.00[CEU][hapmap]
rs12452509	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12452682	0.87[ASN][1000 genomes]
rs12452880	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12600625	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12600751	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12936646	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12936996	0.95[CEU][hapmap]
rs12937703	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12938099	0.81[ASN][1000 genomes]
rs12938268	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12939831	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12942352	0.86[ASN][1000 genomes]
rs12942360	0.85[ASN][1000 genomes]
rs12943928	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12947281	0.83[ASN][1000 genomes]
rs12947620	0.89[CEU][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12948560	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12948906	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12950666	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13341996	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1966915	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1966916	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2024073	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2061338	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2061342	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2100651	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2168785	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2303316	1.00[CEU][hapmap]
rs2338755	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2338795	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2338797	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2338798	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2338799	0.80[ASN][1000 genomes]
rs2338800	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2338801	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28799952	0.82[ASN][1000 genomes]
rs33933929	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34363096	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34432983	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34473775	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34597616	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34627893	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34957982	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35112839	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35285898	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35497503	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35546703	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35667594	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36064019	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3744348	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3964723	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4239222	1.00[CEU][hapmap]
rs4286140	0.89[ASN][1000 genomes]
rs4287601	0.80[ASN][1000 genomes]
rs4325601	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4390625	0.85[CEU][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4410117	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4462633	0.87[ASN][1000 genomes]
rs4511574	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4794807	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4794808	0.82[ASN][1000 genomes]
rs4794810	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4794814	1.00[CEU][hapmap]
rs4795355	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4795356	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4795357	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4795358	0.85[ASN][1000 genomes]
rs4795359	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4795361	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4795362	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4795364	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4795367	0.81[ASN][1000 genomes]
rs4795369	0.90[ASN][1000 genomes]
rs4795371	0.86[ASN][1000 genomes]
rs55689507	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55722796	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57399933	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57448077	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs583980	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs585961	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs587343	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs588193	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs593480	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs600010	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs602282	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs602688	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61161659	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs612209	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs620686	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs632202	0.95[CEU][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs632606	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs634365	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs638201	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs644173	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs650106	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6503500	0.83[ASN][1000 genomes]
rs6503501	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6503502	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6503503	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503504	0.80[ASN][1000 genomes]
rs6503506	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6503507	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6503513	1.00[ASN][1000 genomes]
rs6503515	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6503517	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs677888	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679995	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68178216	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs683948	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7208252	0.85[ASN][1000 genomes]
rs7208274	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7208487	0.83[ASN][1000 genomes]
rs7208714	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7210488	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7212621	0.82[ASN][1000 genomes]
rs7215983	0.82[ASN][1000 genomes]
rs7216086	1.00[CEU][hapmap]
rs7218074	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7218484	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7218670	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7219014	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7219294	0.85[ASN][1000 genomes]
rs7220650	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7221117	0.81[ASN][1000 genomes]
rs7221875	0.95[CEU][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7222252	1.00[CEU][hapmap]
rs7223331	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7223438	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7223896	0.83[ASN][1000 genomes]
rs7225096	0.95[CEU][hapmap]
rs73293051	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7359658	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7405667	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7501488	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7503069	1.00[CEU][hapmap]
rs7503081	0.83[ASN][1000 genomes]
rs7503705	1.00[CEU][hapmap]
rs752314	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs755500	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs801419	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs801420	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs801426	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8065879	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8065963	1.00[CEU][hapmap]
rs8066704	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8067302	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8067511	0.80[ASN][1000 genomes]
rs8067948	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8068427	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8069451	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8070695	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8072297	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8072351	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8073511	0.83[ASN][1000 genomes]
rs8074855	0.81[ASN][1000 genomes]
rs8076462	0.95[CEU][hapmap]
rs8076494	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8076546	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8077104	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8079303	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8079355	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8079560	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8079590	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8079662	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8081033	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8081220	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8081338	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8081780	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9646419	0.81[ASN][1000 genomes]
rs9747342	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9892055	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9892675	0.99[ASN][1000 genomes]
rs9894500	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9894586	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9894864	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9896913	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9898170	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9898773	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9899069	0.83[ASN][1000 genomes]
rs9901219	1.00[ASN][1000 genomes]
rs9903363	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9904334	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9905432	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9905617	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9906612	0.85[ASN][1000 genomes]
rs9908131	0.82[ASN][1000 genomes]
rs9908760	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9909064	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9913320	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9916302	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9944411	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9944459	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
11	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
12	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9904919	C17orf37	cis	uninvolved skin	skin_eQTL
rs9904919	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs9904919	PGAP3	cis	Heart Left Ventricle	GTEx

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37517600-37556600	Weak transcription	Fetal Muscle Leg	muscle
2	chr17:37533200-37556600	Weak transcription	Pancreas	Pancrea
3	chr17:37539200-37556800	Weak transcription	Gastric	stomach
4	chr17:37541600-37556800	Weak transcription	Lung	lung
5	chr17:37541600-37557000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr17:37543400-37556600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:37544600-37556600	Weak transcription	Fetal Thymus	thymus
8	chr17:37544800-37556600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr17:37544800-37556600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr17:37545000-37556600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:37545200-37556600	Weak transcription	Placenta	Placenta
12	chr17:37548600-37556600	Weak transcription	Left Ventricle	heart
13	chr17:37552800-37556600	Weak transcription	NH-A	brain
14	chr17:37555200-37556600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr17:37555400-37556600	Enhancers	Adipose Nuclei	Adipose
16	chr17:37555400-37556600	Enhancers	Rectal Smooth Muscle	rectum
17	chr17:37555600-37556600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr17:37555600-37556600	Enhancers	Primary T cells from cord blood	blood
19	chr17:37555600-37556600	Enhancers	Liver	Liver
20	chr17:37555600-37556800	Enhancers	Brain Angular Gyrus	brain
21	chr17:37555600-37559000	Active TSS	K562	blood
22	chr17:37555800-37556600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr17:37555800-37556600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr17:37555800-37556800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr17:37555800-37556800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr17:37555800-37556800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr17:37555800-37557000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr17:37555800-37557200	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr17:37555800-37557400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr17:37556000-37556600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr17:37556000-37556600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr17:37556000-37556600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr17:37556000-37556600	Enhancers	Brain Anterior Caudate	brain
34	chr17:37556000-37556600	Enhancers	Fetal Lung	lung
35	chr17:37556000-37556600	Enhancers	Fetal Stomach	stomach
36	chr17:37556000-37556600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr17:37556000-37556800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr17:37556000-37557000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr17:37556000-37557000	Flanking Active TSS	Fetal Brain Female	brain
40	chr17:37556000-37557200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr17:37556000-37557400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr17:37556000-37557400	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr17:37556200-37556600	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr17:37556200-37556600	Enhancers	Brain Cingulate Gyrus	brain
45	chr17:37556200-37556600	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr17:37556200-37556600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr17:37556200-37556600	Enhancers	Fetal Heart	heart
48	chr17:37556200-37556600	Active TSS	NHLF	lung
49	chr17:37556200-37556800	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr17:37556200-37556800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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