Variant report

Variant	rs8076546
Chromosome Location	chr17:37555403-37555404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37553983..37556273-chr17:37556304..37558931,2	K562	blood:
2	chr17:37553969..37556475-chr17:37564742..37566292,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266469	Chromatin interaction
ENSG00000108306	Chromatin interaction

Extended variants
information (count: 268 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:256)

rs_ID	r²[population]
rs10221223	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10432030	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10432031	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10445306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10445307	0.85[ASN][1000 genomes]
rs10491128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11078893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11078894	0.88[CHB][hapmap]
rs11078895	0.88[CHB][hapmap]
rs11078896	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11078900	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11078901	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11078902	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078903	0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078904	0.85[ASN][1000 genomes]
rs11078906	0.83[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.97[TSI][hapmap]
rs11078907	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11650081	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11650146	0.86[EUR][1000 genomes]
rs11651089	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11654018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs11657058	0.82[CHB][hapmap]
rs11657899	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11658678	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11867312	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11868029	0.86[ASN][1000 genomes]
rs11868030	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11868133	0.91[ASN][1000 genomes]
rs11869109	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11869259	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11869323	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11870631	0.86[ASN][1000 genomes]
rs11870713	0.82[AMR][1000 genomes]
rs11871813	0.83[ASN][1000 genomes]
rs12150047	0.82[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs12150493	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12449852	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs12450559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs12452509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12452682	0.86[ASN][1000 genomes]
rs12452880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12600625	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12600751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12936646	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12936996	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs12937703	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12938099	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs12938268	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12939831	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12942352	0.85[ASN][1000 genomes]
rs12942360	0.84[ASN][1000 genomes]
rs12943928	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12947281	0.82[ASN][1000 genomes]
rs12947506	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs12947620	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12948560	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12948906	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12950186	0.87[CHB][hapmap]
rs12950666	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13341996	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1966915	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1966916	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2024073	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2061338	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2061342	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2100651	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2168785	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2302073	0.88[CHB][hapmap]
rs2303316	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2338755	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2338795	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2338797	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2338798	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2338799	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2338800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2338801	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28482878	0.80[ASN][1000 genomes]
rs2879258	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs28799952	0.83[ASN][1000 genomes]
rs33933929	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34363096	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34432983	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473775	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34597616	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34627893	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34957982	0.81[EUR][1000 genomes]
rs35112839	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35285898	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35497503	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35546703	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35667594	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36064019	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3744348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3744349	0.82[CHB][hapmap]
rs3964723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4239222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs4286140	0.88[ASN][1000 genomes]
rs4287601	0.81[ASN][1000 genomes]
rs4325601	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4390625	0.85[CEU][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4410117	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4462633	0.86[ASN][1000 genomes]
rs4511574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4516267	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs4794807	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4794808	0.83[ASN][1000 genomes]
rs4794810	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4794814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs4795355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4795356	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4795357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4795358	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs4795359	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4795361	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4795362	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4795364	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4795367	0.80[ASN][1000 genomes]
rs4795369	0.94[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[ASN][1000 genomes]
rs4795371	0.85[ASN][1000 genomes]
rs4795379	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs55689507	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55722796	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57399933	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57448077	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs582176	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs583980	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs584377	0.82[CHB][hapmap]
rs585961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs587343	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs588193	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs590051	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs593480	0.92[CHB][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs597069	0.87[CHB][hapmap];0.90[CHD][hapmap]
rs600010	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs602282	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs602688	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61161659	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs612209	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs620686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs632202	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs632606	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs634365	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs638201	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs644173	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs649180	0.88[CHB][hapmap]
rs650106	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6503500	0.88[CHB][hapmap];0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs6503501	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6503502	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503504	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs6503506	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6503507	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6503513	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.99[ASN][1000 genomes]
rs6503515	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6503517	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs667239	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs676882	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs677888	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs679995	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68178216	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs683948	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7208252	0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs7208274	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7208487	0.82[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs7208714	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7210488	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7212621	0.82[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs7215983	0.83[ASN][1000 genomes]
rs7216086	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7218074	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7218484	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7218670	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7219014	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7219294	0.84[ASN][1000 genomes]
rs7220650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7221117	0.82[ASN][1000 genomes]
rs7221875	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7222252	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7223331	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7223438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7223896	0.82[ASN][1000 genomes]
rs7225096	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs73293051	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7359658	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7405667	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7501488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7503069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7503081	0.84[ASN][1000 genomes]
rs7503377	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs7503705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs752314	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs755500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs801418	0.88[CHB][hapmap]
rs801419	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs801420	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs801426	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs801427	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs8065879	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8065963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs8066704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8067302	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8067948	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8068427	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8069074	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs8069451	0.95[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8070695	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8072297	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8072351	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8073511	0.84[ASN][1000 genomes]
rs8073907	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs8074855	0.80[ASN][1000 genomes]
rs8076462	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8076494	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8077104	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8079303	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8079355	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8079560	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8079590	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8079662	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8081033	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8081220	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8081338	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8081780	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9646419	0.82[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs9747342	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9891892	0.80[ASN][1000 genomes]
rs9892055	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9892675	1.00[ASN][1000 genomes]
rs9893735	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs9894500	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9894586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9894864	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9896913	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9898170	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9898773	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9899069	0.84[ASN][1000 genomes]
rs9901219	0.99[ASN][1000 genomes]
rs9903363	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9904334	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9904919	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9905432	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9905617	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9906612	0.82[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs9908131	0.82[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs9908760	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9909064	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9909304	0.80[ASN][1000 genomes]
rs9912310	0.80[ASN][1000 genomes]
rs9913320	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9916302	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9944411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9944459	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
11	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
12	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs8076546	CCL4	cis	cerebellum	SCAN
rs8076546	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs8076546	C17orf37	cis	uninvolved skin	skin_eQTL
rs8076546	PGAP3	cis	Heart Left Ventricle	GTEx
rs8076546	DHRS11	cis	cerebellum	SCAN
rs8076546	SLFN14	cis	parietal	SCAN
rs8076546	PGAP3	cis	cerebellum	SCAN
rs8076546	PIGW	cis	parietal	SCAN
rs8076546	NEUROD2	cis	parietal	SCAN

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37498800-37556400	Weak transcription	Thymus	Thymus
2	chr17:37514800-37556200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:37515400-37555600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr17:37517600-37556600	Weak transcription	Fetal Muscle Leg	muscle
5	chr17:37522600-37556200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr17:37522800-37556400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr17:37523400-37556200	Weak transcription	Ovary	ovary
8	chr17:37523600-37555800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:37530200-37555600	Weak transcription	Primary T cells from cord blood	blood
10	chr17:37533200-37556200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:37533200-37556600	Weak transcription	Pancreas	Pancrea
12	chr17:37534200-37556200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr17:37534400-37555600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:37534400-37555800	Weak transcription	Hela-S3	cervix
15	chr17:37534400-37556200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr17:37536800-37556000	Weak transcription	Brain Anterior Caudate	brain
17	chr17:37537000-37555600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr17:37537000-37556200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:37537000-37556200	Weak transcription	Brain Hippocampus Middle	brain
20	chr17:37538800-37555600	Weak transcription	Primary B cells from cord blood	blood
21	chr17:37539200-37556800	Weak transcription	Gastric	stomach
22	chr17:37541400-37555600	Weak transcription	Brain Angular Gyrus	brain
23	chr17:37541600-37556800	Weak transcription	Lung	lung
24	chr17:37541600-37557000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:37542800-37555800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr17:37543200-37555600	Weak transcription	Fetal Brain Female	brain
27	chr17:37543400-37556600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr17:37543600-37556000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr17:37544400-37556200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr17:37544600-37556000	Weak transcription	Fetal Stomach	stomach
31	chr17:37544600-37556400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr17:37544600-37556400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr17:37544600-37556600	Weak transcription	Fetal Thymus	thymus
34	chr17:37544800-37555600	Weak transcription	Liver	Liver
35	chr17:37544800-37555800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr17:37544800-37556200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr17:37544800-37556400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr17:37544800-37556600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr17:37544800-37556600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr17:37545000-37556600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr17:37545200-37556600	Weak transcription	Placenta	Placenta
42	chr17:37545800-37555600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr17:37548600-37556600	Weak transcription	Left Ventricle	heart
44	chr17:37550400-37555800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr17:37550400-37556000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr17:37550400-37556400	Weak transcription	HSMM	muscle
47	chr17:37552400-37556400	Weak transcription	Fetal Kidney	kidney
48	chr17:37552800-37556400	Weak transcription	Brain Substantia Nigra	brain
49	chr17:37552800-37556600	Weak transcription	NH-A	brain
50	chr17:37553600-37555600	Enhancers	Primary T helper cells PMA-I stimulated	--

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