Variant report

Variant	rs7208487
Chromosome Location	chr17:37543449-37543450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 217 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs10221223	0.83[ASN][1000 genomes]
rs10445306	0.87[CHB][hapmap]
rs10491128	0.82[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs10491129	0.82[CHB][hapmap]
rs11078893	0.82[CHB][hapmap]
rs11078894	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11078895	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11078897	0.82[CHB][hapmap]
rs11078898	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs11078899	0.81[EUR][1000 genomes]
rs11078901	0.82[CHB][hapmap]
rs11078902	0.82[CHB][hapmap]
rs11078906	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs11078907	0.80[CHB][hapmap]
rs11654018	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs11655972	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11657058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs11657153	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs11657899	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs11658678	0.82[CHB][hapmap]
rs11869109	0.84[ASN][1000 genomes]
rs11869259	0.84[ASN][1000 genomes]
rs11869323	0.86[ASN][1000 genomes]
rs11871813	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12150047	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12150493	0.81[ASN][1000 genomes]
rs12449852	0.93[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12450559	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs12452509	0.82[CHB][hapmap];0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs12452880	0.82[CHB][hapmap]
rs12600625	0.82[ASN][1000 genomes]
rs12600751	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs12936996	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs12937013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12938099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12938268	0.81[ASN][1000 genomes]
rs12941418	0.80[EUR][1000 genomes]
rs12947506	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.94[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12947620	0.87[CHD][hapmap]
rs12950186	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13341996	0.82[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs1971663	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2061338	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs2302073	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2303316	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs2338755	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs2338797	0.84[ASN][1000 genomes]
rs2338798	0.86[ASN][1000 genomes]
rs2338799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2338800	0.82[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs2338801	0.80[ASN][1000 genomes]
rs28482878	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2879258	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2879259	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28799952	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34432983	0.84[ASN][1000 genomes]
rs34597616	0.83[ASN][1000 genomes]
rs35285898	0.84[ASN][1000 genomes]
rs35546703	0.85[ASN][1000 genomes]
rs3744348	0.82[CHB][hapmap]
rs3744349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3964723	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs4239222	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs4287601	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4390625	0.82[CHD][hapmap]
rs4410117	0.81[ASN][1000 genomes]
rs4511574	0.82[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs4516267	0.86[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4794807	0.86[ASN][1000 genomes]
rs4794808	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4794814	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs4795355	0.82[CHB][hapmap]
rs4795356	0.82[CHB][hapmap];0.90[CHD][hapmap];0.85[ASN][1000 genomes]
rs4795357	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs4795358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4795359	0.81[ASN][1000 genomes]
rs4795364	0.80[ASN][1000 genomes]
rs4795367	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795369	0.84[CHD][hapmap]
rs4795375	0.81[ASN][1000 genomes]
rs4795379	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs57399933	0.85[ASN][1000 genomes]
rs57933226	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs582088	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs582176	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs584377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs585961	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs587880	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs588193	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs590051	0.86[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs593480	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs594794	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs597069	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs600010	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs602688	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs612209	0.81[ASN][1000 genomes]
rs620686	0.82[CHB][hapmap]
rs632202	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs634365	0.85[CHD][hapmap]
rs644173	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs649180	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs650106	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6503500	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6503502	0.83[ASN][1000 genomes]
rs6503503	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs6503504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6503506	0.86[ASN][1000 genomes]
rs6503507	0.82[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs6503513	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs651827	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs665413	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs667193	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs667239	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs676882	0.80[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.86[TSI][hapmap]
rs68178216	0.86[ASN][1000 genomes]
rs7208252	1.00[ASW][hapmap];0.92[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7208274	0.84[ASN][1000 genomes]
rs7208714	0.87[ASN][1000 genomes]
rs7210488	0.87[ASN][1000 genomes]
rs7212621	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7215983	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7216086	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs7218074	0.87[ASN][1000 genomes]
rs7218484	0.82[ASN][1000 genomes]
rs7218670	0.83[ASN][1000 genomes]
rs7220650	0.82[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs7221117	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7221875	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs7222252	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs7223331	0.83[ASN][1000 genomes]
rs7223438	0.82[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs7225096	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs73293051	0.84[ASN][1000 genomes]
rs7359658	0.81[ASN][1000 genomes]
rs7405667	0.81[ASN][1000 genomes]
rs7501488	0.82[CHB][hapmap];0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs7503069	0.82[CHB][hapmap]
rs7503081	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7503377	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs7503705	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs752314	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs755500	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs801417	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs801418	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs801426	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs801427	0.86[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs801429	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8065879	0.86[ASN][1000 genomes]
rs8065963	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs8066704	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs8067302	0.83[ASN][1000 genomes]
rs8067511	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8067948	0.83[ASN][1000 genomes]
rs8068427	0.82[ASN][1000 genomes]
rs8069074	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs8069451	0.88[CHD][hapmap]
rs8070695	0.82[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs8071300	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8072297	0.80[ASN][1000 genomes]
rs8072351	0.81[ASN][1000 genomes]
rs8073511	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073907	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8074276	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8074855	0.90[ASN][1000 genomes]
rs8076462	0.82[CHB][hapmap]
rs8076494	0.82[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs8076546	0.82[CHB][hapmap];0.87[CHD][hapmap];0.84[ASN][1000 genomes]
rs8077104	0.86[ASN][1000 genomes]
rs8078599	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8079303	0.86[ASN][1000 genomes]
rs8079560	0.83[ASN][1000 genomes]
rs8079590	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs8081033	0.82[ASN][1000 genomes]
rs9646419	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9747983	0.82[ASN][1000 genomes]
rs9890198	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9891892	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9892055	0.82[CHB][hapmap];0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs9892675	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9893735	0.86[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9894500	0.86[ASN][1000 genomes]
rs9894586	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs9894864	0.82[ASN][1000 genomes]
rs9896913	0.86[ASN][1000 genomes]
rs9898170	0.84[ASN][1000 genomes]
rs9898773	0.86[ASN][1000 genomes]
rs9899069	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901219	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9903363	0.83[ASN][1000 genomes]
rs9904334	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs9904919	0.83[ASN][1000 genomes]
rs9905432	0.84[ASN][1000 genomes]
rs9905617	0.83[ASN][1000 genomes]
rs9906612	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9908131	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9908760	0.83[ASN][1000 genomes]
rs9909064	0.83[ASN][1000 genomes]
rs9909304	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9912212	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9912310	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9916302	0.80[ASN][1000 genomes]
rs9944411	0.82[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs9944459	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
6	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
7	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
8	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
9	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
12	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
13	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
14	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Primary biliary cirrhosis	21399635	GWAS catalog

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7208487	SPACA3	cis	parietal	SCAN
rs7208487	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs7208487	DHRS11	cis	cerebellum	SCAN
rs7208487	SLFN14	cis	parietal	SCAN
rs7208487	MYO1D	cis	parietal	SCAN
rs7208487	PGAP3	cis	Thyroid	GTEx
rs7208487	GSDMA	cis	parietal	SCAN
rs7208487	CCL4	cis	cerebellum	SCAN

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37498600-37543800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr17:37498600-37544000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr17:37498800-37556400	Weak transcription	Thymus	Thymus
4	chr17:37499200-37544000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr17:37514800-37556200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr17:37515400-37555600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr17:37517600-37555200	Weak transcription	Brain Germinal Matrix	brain
8	chr17:37517600-37556600	Weak transcription	Fetal Muscle Leg	muscle
9	chr17:37518000-37554800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:37521200-37544400	Weak transcription	Placenta	Placenta
11	chr17:37522600-37546800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:37522600-37555400	Weak transcription	Fetal Lung	lung
13	chr17:37522600-37556200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr17:37522800-37554800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr17:37522800-37555400	Weak transcription	Adipose Nuclei	Adipose
16	chr17:37522800-37556400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr17:37523200-37546800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr17:37523400-37556200	Weak transcription	Ovary	ovary
19	chr17:37523600-37555800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr17:37529800-37544000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:37530200-37555600	Weak transcription	Primary T cells from cord blood	blood
22	chr17:37533000-37546600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr17:37533200-37544000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr17:37533200-37548200	Weak transcription	Left Ventricle	heart
25	chr17:37533200-37556200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr17:37533200-37556600	Weak transcription	Pancreas	Pancrea
27	chr17:37534200-37546600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr17:37534200-37548800	Weak transcription	Spleen	Spleen
29	chr17:37534200-37556200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr17:37534400-37543800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr17:37534400-37546200	Weak transcription	Esophagus	oesophagus
32	chr17:37534400-37555600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr17:37534400-37555800	Weak transcription	Hela-S3	cervix
34	chr17:37534400-37556200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr17:37534600-37554800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:37534800-37551800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr17:37535000-37543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr17:37535000-37548400	Weak transcription	Small Intestine	intestine
39	chr17:37536000-37553600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr17:37536800-37543600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr17:37536800-37544400	Weak transcription	Liver	Liver
42	chr17:37536800-37546400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr17:37536800-37556000	Weak transcription	Brain Anterior Caudate	brain
44	chr17:37537000-37543800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr17:37537000-37544000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr17:37537000-37555600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr17:37537000-37556200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr17:37537000-37556200	Weak transcription	Brain Hippocampus Middle	brain
49	chr17:37537200-37544200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr17:37537600-37552400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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