Variant report

Variant	rs9901219
Chromosome Location	chr17:37558369-37558370
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr17:37557453-37558451	HEK293-T-REx	kidney:	n/a	chr17:37557992-37558001 chr17:37557525-37557534 chr17:37558125-37558146
2	PAX5	chr17:37557527-37558460	GM12892	blood:	n/a	n/a
3	POLR2A	chr17:37557591-37558634	HL-60	blood:	n/a	n/a
4	HEY1	chr17:37557692-37558493	HepG2	liver:	n/a	chr17:37558076-37558091 chr17:37558002-37558017 chr17:37557983-37557998 chr17:37557831-37557846 chr17:37558000-37558015 chr17:37558067-37558082
5	POLR2A	chr17:37557996-37558540	GM12891	blood:	n/a	n/a
6	EP300	chr17:37557724-37558469	ECC-1	luminal epithelium:	n/a	chr17:37558055-37558071 chr17:37557838-37557847 chr17:37558006-37558015 chr17:37558067-37558083 chr17:37558003-37558012 chr17:37557832-37557841 chr17:37558079-37558088
7	YY1	chr17:37557725-37558523	GM12878	blood:	n/a	chr17:37558007-37558016 chr17:37557831-37557845 chr17:37558004-37558018 chr17:37558042-37558056 chr17:37558023-37558034 chr17:37557986-37557997 chr17:37558002-37558013 chr17:37557830-37557844 chr17:37557833-37557847 chr17:37558005-37558016 chr17:37558077-37558086 chr17:37558001-37558015 chr17:37558001-37558010 chr17:37558004-37558013
8	MAZ	chr17:37557708-37559103	GM12878	blood:	n/a	chr17:37558725-37558735
9	POLR2A	chr17:37557626-37558996	NB4	blood:	n/a	n/a
10	POLR2A	chr17:37557474-37558528	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr17:37557650-37558424	HepG2	liver:	n/a	n/a
12	YY1	chr17:37558300-37558523	GM12892	blood:	n/a	n/a
13	CREB1	chr17:37557494-37558539	A549	lung:	n/a	n/a
14	MAZ	chr17:37557666-37558519	HepG2	liver:	n/a	n/a
15	E2F6	chr17:37557646-37559209	K562	blood:	n/a	chr17:37558922-37558931 chr17:37558930-37558942 chr17:37558846-37558856 chr17:37558002-37558012 chr17:37558932-37558943 chr17:37558078-37558088 chr17:37558931-37558938 chr17:37558920-37558929 chr17:37557982-37557994 chr17:37557831-37557841 chr17:37558005-37558015 chr17:37558931-37558939 chr17:37558885-37558894 chr17:37558930-37558941 chr17:37558931-37558942 chr17:37558930-37558940 chr17:37558931-37558939
16	YY1	chr17:37558321-37558520	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAX	chr17:37557783-37558479	A549	lung:	n/a	n/a
18	YY1	chr17:37558256-37558540	HepG2	liver:	n/a	n/a
19	MXI1	chr17:37556556-37559430	IMR90	lung:	n/a	n/a
20	POLR2A	chr17:37557628-37558450	GM15510	blood:	n/a	n/a
21	EGR1	chr17:37558340-37558809	K562	blood:	n/a	chr17:37558608-37558618 chr17:37558546-37558560
22	POLR2A	chr17:37557476-37558448	PBDE	blood:	n/a	n/a
23	MYC	chr17:37557582-37559138	K562	blood:	n/a	chr17:37558725-37558735
24	POLR2A	chr17:37557519-37558486	A549	lung:	n/a	n/a
25	POLR2A	chr17:37557443-37558520	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr17:37557509-37558430	A549	lung:	n/a	n/a
27	RCOR1	chr17:37557658-37558403	HepG2	liver:	n/a	n/a
28	TCF12	chr17:37557687-37558524	ECC-1	luminal epithelium:	n/a	n/a
29	POLR2A	chr17:37557466-37558958	K562	blood:	n/a	n/a
30	MYC	chr17:37557754-37558535	K562	blood:	n/a	n/a
31	HMGN3	chr17:37557319-37558414	K562	blood:	n/a	n/a
32	TAF1	chr17:37557445-37558620	H1-neurons	neurons:	n/a	n/a
33	REST	chr17:37557144-37559382	H1-neurons	neurons:	n/a	chr17:37558732-37558745 chr17:37558701-37558721 chr17:37557933-37557951 chr17:37557943-37557952 chr17:37557713-37557726 chr17:37557974-37557987
34	SIN3A	chr17:37557139-37559277	H1-hESC	embryonic stem cell:	n/a	chr17:37558871-37558880 chr17:37557716-37557729
35	TCF12	chr17:37557423-37559349	A549	lung:	n/a	chr17:37559212-37559219
36	POLR2A	chr17:37557697-37559007	HepG2	liver:	n/a	n/a
37	MAX	chr17:37557688-37558414	MCF-7	breast:	n/a	n/a
38	MBD4	chr17:37557920-37558471	HepG2	liver:	n/a	n/a
39	MAX	chr17:37557369-37559315	HepG2	liver:	n/a	chr17:37558725-37558735
40	POLR2A	chr17:37557497-37558558	K562	blood:	n/a	n/a
41	PBX3	chr17:37557863-37558622	SK-N-SH	brain:	n/a	chr17:37558415-37558424
42	CCNT2	chr17:37557283-37559037	K562	blood:	n/a	chr17:37558609-37558618 chr17:37558025-37558034 chr17:37557977-37557986 chr17:37558778-37558787 chr17:37558799-37558808 chr17:37558732-37558741
43	SIN3AK20	chr17:37557493-37559261	HCT-116	colon:	n/a	n/a
44	YY1	chr17:37557907-37558517	ECC-1	luminal epithelium:	n/a	chr17:37558007-37558016 chr17:37558004-37558018 chr17:37558042-37558056 chr17:37558023-37558034 chr17:37557986-37557997 chr17:37558002-37558013 chr17:37558005-37558016 chr17:37558077-37558086 chr17:37558001-37558015 chr17:37558001-37558010 chr17:37558004-37558013
45	ZBTB7A	chr17:37557336-37558515	ECC-1	luminal epithelium:	n/a	chr17:37557387-37557395 chr17:37558245-37558253
46	SIN3AK20	chr17:37557184-37558482	H1-hESC	embryonic stem cell:	n/a	n/a
47	MAZ	chr17:37556356-37559228	IMR90	lung:	n/a	chr17:37556729-37556740 chr17:37558725-37558735
48	POLR2A	chr17:37557436-37559059	K562	blood:	n/a	n/a
49	USF1	chr17:37557806-37558394	ECC-1	luminal epithelium:	n/a	chr17:37558054-37558070 chr17:37558062-37558078 chr17:37558001-37558017 chr17:37557830-37557846
50	YY1	chr17:37558017-37558483	A549	lung:	n/a	chr17:37558042-37558056 chr17:37558023-37558034 chr17:37558077-37558086

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:37558343-37558393	HAEpiC	amniotic membrane:	n/a
2	chr17:37558343-37558393	Caco-2	colon:	n/a
3	chr17:37558343-37558393	HCPEpiC	choroid plexus:	n/a
4	chr17:37558343-37558393	ProgFib	skin:	n/a
5	chr17:37558343-37558393	AG09319	gingival:	n/a
6	chr17:37558343-37558393	HUVEC	blood vessel:	n/a
7	chr17:37558343-37558393	AG09309	skin:	n/a
8	chr17:37558343-37558393	AG04450	lung:	fetal
9	chr17:37558343-37558393	HIPEpiC	eye:	n/a
10	chr17:37558343-37558393	IMR90	lung:	fetal
11	chr17:37558343-37558393	U87	brain:	n/a
12	chr17:37558343-37558393	ECC-1	luminal epithelium:	n/a
13	chr17:37558343-37558393	NH-A	brain:	n/a
14	chr17:37558343-37558393	A549	lung:	n/a
15	chr17:37558343-37558393	HRE	kidney:	n/a
16	chr17:37558343-37558393	K562	blood:	n/a
17	chr17:37558343-37558393	GM19239	blood:	n/a
18	chr17:37558343-37558393	MCF10A-Er-Src	breast:	n/a
19	chr17:37558343-37558393	H1-hESC	embryonic stem cell:	embryo
20	chr17:37558343-37558393	GM12891	blood:	n/a
21	chr17:37558343-37558393	HRPEpiC	eye:	n/a
22	chr17:37558343-37558393	SK-N-MC	brain:	n/a
23	chr17:37558343-37558393	HEEpiC	esophagus:	n/a
24	chr17:37558343-37558393	NHDF-neo	bronchial:	n/a
25	chr17:37558343-37558393	ovcar-3	ovarian:	n/a
26	chr17:37558343-37558393	PANC-1	pancreas:	n/a
27	chr17:37558343-37558393	SAEC	small airway:	n/a
28	chr17:37558343-37558393	SK-N-SH_RA	brain:	n/a
29	chr17:37558343-37558393	HNPCEpiC	eye:	n/a
30	chr17:37558343-37558393	CMK	blood:	n/a
31	chr17:37558343-37558393	PrEC	prostate:	n/a
32	chr17:37558343-37558393	GM12892	blood:	n/a
33	chr17:37558343-37558393	HRCEpiC	kidney:	n/a
34	chr17:37558343-37558393	HMEC	breast:	n/a
35	chr17:37558343-37558393	BJ	skin:	n/a
36	chr17:37558343-37558393	PFSK-1	brain:	n/a
37	chr17:37558343-37558393	Hela-S3	cervix:	n/a
38	chr17:37558343-37558393	NHBE	bronchial:	n/a
39	chr17:37558343-37558393	HPAEpiC	pulmonary alveolar:	n/a
40	chr17:37558343-37558393	SK-N-SH	brain:	n/a
41	chr17:37558343-37558393	HEK293	kidney:	embryo
42	chr17:37558343-37558393	LNCaP	prostate:	n/a
43	chr17:37558343-37558393	NT2-D1	testis:	n/a
44	chr17:37558343-37558393	NB4	blood:	n/a
45	chr17:37558343-37558393	HCF	heart:	n/a
46	chr17:37558343-37558393	AoSMC	blood vessel:	n/a
47	chr17:37558343-37558393	Hepatocyte	liver:	n/a
48	chr17:37558343-37558393	GM06990	blood:	n/a
49	chr17:37558343-37558393	Jurkat	blood:	n/a
50	chr17:37558343-37558393	T-47D	breast:	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:37355105..37358524-chr17:37557086..37559530,5	K562	blood:
2	chr17:37556967..37560024-chr17:37605171..37608348,4	K562	blood:
3	chr17:37558229..37558889-chr22:41842489..41843313,2	Hela-S3	cervix:
4	chr17:37358720..37361639-chr17:37557568..37559988,2	K562	blood:
5	chr17:37556913..37559429-chr17:37617747..37620632,2	K562	blood:
6	chr17:37557413..37559525-chr17:37605171..37609188,5	K562	blood:

Variant related genes	Relation type
FBXL20	TF binding region
FBXL20	CpG island
ENSG00000108298	Chromatin interaction
ENSG00000167258	Chromatin interaction
ENSG00000183864	Chromatin interaction
ENSG00000125686	Chromatin interaction

Extended variants
information (count: 222 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:210)

rs_ID	r²[population]
rs10221223	0.93[ASN][1000 genomes]
rs10432030	0.82[ASN][1000 genomes]
rs10432031	0.81[ASN][1000 genomes]
rs10445306	0.94[ASN][1000 genomes]
rs10445307	0.86[ASN][1000 genomes]
rs10491128	0.99[ASN][1000 genomes]
rs10491129	0.87[ASN][1000 genomes]
rs11078896	0.86[ASN][1000 genomes]
rs11078897	0.86[ASN][1000 genomes]
rs11078898	0.95[ASN][1000 genomes]
rs11078900	0.93[ASN][1000 genomes]
rs11078901	0.85[ASN][1000 genomes]
rs11078902	0.87[ASN][1000 genomes]
rs11078903	0.87[ASN][1000 genomes]
rs11078904	0.86[ASN][1000 genomes]
rs11650081	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11651089	0.82[ASN][1000 genomes]
rs11657899	0.86[ASN][1000 genomes]
rs11867312	0.93[ASN][1000 genomes]
rs11868029	0.86[ASN][1000 genomes]
rs11868030	0.86[ASN][1000 genomes]
rs11868133	0.92[ASN][1000 genomes]
rs11869109	0.94[ASN][1000 genomes]
rs11869259	0.94[ASN][1000 genomes]
rs11869323	0.95[ASN][1000 genomes]
rs11870631	0.87[ASN][1000 genomes]
rs11871813	0.82[ASN][1000 genomes]
rs12150047	0.81[ASN][1000 genomes]
rs12150493	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12452509	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12452682	0.87[ASN][1000 genomes]
rs12452880	0.96[ASN][1000 genomes]
rs12600625	0.97[ASN][1000 genomes]
rs12600751	0.99[ASN][1000 genomes]
rs12936646	0.87[ASN][1000 genomes]
rs12937703	0.95[ASN][1000 genomes]
rs12938099	0.81[ASN][1000 genomes]
rs12938268	0.98[ASN][1000 genomes]
rs12939831	0.94[ASN][1000 genomes]
rs12942352	0.86[ASN][1000 genomes]
rs12942360	0.85[ASN][1000 genomes]
rs12943928	0.92[ASN][1000 genomes]
rs12947281	0.83[ASN][1000 genomes]
rs12947620	0.93[ASN][1000 genomes]
rs12948560	0.83[ASN][1000 genomes]
rs12948906	0.87[ASN][1000 genomes]
rs12950666	0.90[ASN][1000 genomes]
rs13341996	0.95[ASN][1000 genomes]
rs1966915	0.86[ASN][1000 genomes]
rs1966916	0.86[ASN][1000 genomes]
rs2024073	0.87[ASN][1000 genomes]
rs2061338	0.86[ASN][1000 genomes]
rs2061342	0.85[ASN][1000 genomes]
rs2100651	0.84[ASN][1000 genomes]
rs2168785	0.86[ASN][1000 genomes]
rs2338755	0.86[ASN][1000 genomes]
rs2338795	0.84[ASN][1000 genomes]
rs2338797	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2338798	0.97[ASN][1000 genomes]
rs2338799	0.80[ASN][1000 genomes]
rs2338800	0.93[ASN][1000 genomes]
rs2338801	0.90[ASN][1000 genomes]
rs28799952	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs33933929	0.85[ASN][1000 genomes]
rs34363096	0.94[ASN][1000 genomes]
rs34432983	0.99[ASN][1000 genomes]
rs34473775	0.80[ASN][1000 genomes]
rs34597616	0.98[ASN][1000 genomes]
rs34627893	0.87[ASN][1000 genomes]
rs34957982	0.80[ASN][1000 genomes]
rs35112839	0.92[ASN][1000 genomes]
rs35285898	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs35497503	0.91[ASN][1000 genomes]
rs35546703	0.94[ASN][1000 genomes]
rs35667594	0.86[ASN][1000 genomes]
rs36064019	0.96[ASN][1000 genomes]
rs3744348	0.86[ASN][1000 genomes]
rs3964723	0.86[ASN][1000 genomes]
rs4286140	0.89[ASN][1000 genomes]
rs4287601	0.80[ASN][1000 genomes]
rs4325601	0.85[ASN][1000 genomes]
rs4390625	0.91[ASN][1000 genomes]
rs4410117	0.98[ASN][1000 genomes]
rs4462633	0.87[ASN][1000 genomes]
rs4511574	0.95[ASN][1000 genomes]
rs4794807	0.95[ASN][1000 genomes]
rs4794808	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4794810	0.93[ASN][1000 genomes]
rs4795355	0.83[ASN][1000 genomes]
rs4795356	0.94[ASN][1000 genomes]
rs4795357	1.00[ASN][1000 genomes]
rs4795358	0.85[ASN][1000 genomes]
rs4795359	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4795361	0.83[ASN][1000 genomes]
rs4795362	0.83[ASN][1000 genomes]
rs4795364	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4795367	0.81[ASN][1000 genomes]
rs4795369	0.90[ASN][1000 genomes]
rs4795371	0.86[ASN][1000 genomes]
rs55689507	0.86[ASN][1000 genomes]
rs55722796	0.90[ASN][1000 genomes]
rs57399933	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs57448077	0.87[ASN][1000 genomes]
rs583980	0.84[ASN][1000 genomes]
rs585961	0.87[ASN][1000 genomes]
rs587343	0.87[ASN][1000 genomes]
rs588193	0.87[ASN][1000 genomes]
rs593480	0.87[ASN][1000 genomes]
rs600010	0.86[ASN][1000 genomes]
rs602282	0.85[ASN][1000 genomes]
rs602688	0.87[ASN][1000 genomes]
rs61161659	0.91[ASN][1000 genomes]
rs612209	0.84[ASN][1000 genomes]
rs620686	0.87[ASN][1000 genomes]
rs632202	0.87[ASN][1000 genomes]
rs632606	0.85[ASN][1000 genomes]
rs634365	0.85[ASN][1000 genomes]
rs638201	0.87[ASN][1000 genomes]
rs644173	0.86[ASN][1000 genomes]
rs650106	0.87[ASN][1000 genomes]
rs6503500	0.83[ASN][1000 genomes]
rs6503501	0.85[ASN][1000 genomes]
rs6503502	0.93[ASN][1000 genomes]
rs6503503	0.94[ASN][1000 genomes]
rs6503504	0.80[ASN][1000 genomes]
rs6503506	0.95[ASN][1000 genomes]
rs6503507	0.95[ASN][1000 genomes]
rs6503513	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6503515	0.93[ASN][1000 genomes]
rs6503517	0.86[ASN][1000 genomes]
rs677888	0.87[ASN][1000 genomes]
rs679995	0.87[ASN][1000 genomes]
rs68178216	0.95[ASN][1000 genomes]
rs683948	0.87[ASN][1000 genomes]
rs7208252	0.85[ASN][1000 genomes]
rs7208274	0.94[ASN][1000 genomes]
rs7208487	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7208714	0.96[ASN][1000 genomes]
rs7210488	0.96[ASN][1000 genomes]
rs7212621	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7215983	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7218074	0.96[ASN][1000 genomes]
rs7218484	0.92[ASN][1000 genomes]
rs7218670	0.93[ASN][1000 genomes]
rs7219014	0.88[ASN][1000 genomes]
rs7219294	0.85[ASN][1000 genomes]
rs7220650	0.93[ASN][1000 genomes]
rs7221117	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7221875	0.96[ASN][1000 genomes]
rs7223331	0.93[ASN][1000 genomes]
rs7223438	0.95[ASN][1000 genomes]
rs7223896	0.83[ASN][1000 genomes]
rs73293051	0.94[ASN][1000 genomes]
rs7359658	0.91[ASN][1000 genomes]
rs7405667	0.98[ASN][1000 genomes]
rs7501488	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7503081	0.83[ASN][1000 genomes]
rs752314	0.86[ASN][1000 genomes]
rs755500	0.86[ASN][1000 genomes]
rs801419	0.87[ASN][1000 genomes]
rs801420	0.87[ASN][1000 genomes]
rs801426	0.87[ASN][1000 genomes]
rs8065879	0.95[ASN][1000 genomes]
rs8066704	0.93[ASN][1000 genomes]
rs8067302	0.93[ASN][1000 genomes]
rs8067511	0.80[ASN][1000 genomes]
rs8067948	0.93[ASN][1000 genomes]
rs8068427	0.92[ASN][1000 genomes]
rs8070695	0.93[ASN][1000 genomes]
rs8072297	0.90[ASN][1000 genomes]
rs8072351	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8073511	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8074855	0.81[ASN][1000 genomes]
rs8076494	0.95[ASN][1000 genomes]
rs8076546	0.99[ASN][1000 genomes]
rs8077104	0.95[ASN][1000 genomes]
rs8079303	0.95[ASN][1000 genomes]
rs8079355	0.85[ASN][1000 genomes]
rs8079560	0.93[ASN][1000 genomes]
rs8079590	0.86[ASN][1000 genomes]
rs8079662	0.86[ASN][1000 genomes]
rs8081033	0.92[ASN][1000 genomes]
rs8081220	0.87[ASN][1000 genomes]
rs8081338	0.86[ASN][1000 genomes]
rs8081780	0.86[ASN][1000 genomes]
rs9646419	0.81[ASN][1000 genomes]
rs9747342	0.87[ASN][1000 genomes]
rs9892055	0.92[ASN][1000 genomes]
rs9892675	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9894500	0.95[ASN][1000 genomes]
rs9894586	0.93[ASN][1000 genomes]
rs9894864	0.92[ASN][1000 genomes]
rs9896913	0.95[ASN][1000 genomes]
rs9898170	0.94[ASN][1000 genomes]
rs9898773	0.95[ASN][1000 genomes]
rs9899069	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9903363	0.93[ASN][1000 genomes]
rs9904334	0.87[ASN][1000 genomes]
rs9904919	1.00[ASN][1000 genomes]
rs9905432	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9905617	0.93[ASN][1000 genomes]
rs9906612	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9908131	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9908760	0.93[ASN][1000 genomes]
rs9909064	0.93[ASN][1000 genomes]
rs9909304	0.81[EUR][1000 genomes]
rs9913320	0.86[ASN][1000 genomes]
rs9916302	0.90[ASN][1000 genomes]
rs9944411	0.93[ASN][1000 genomes]
rs9944459	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
11	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
12	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9901219	CRKRS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37555600-37559000	Active TSS	K562	blood
2	chr17:37556200-37558800	Active TSS	Aorta	Aorta
3	chr17:37556200-37559000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:37556200-37559000	Active TSS	Ovary	ovary
5	chr17:37556200-37559000	Active TSS	Right Atrium	heart
6	chr17:37556200-37559000	Active TSS	HSMMtube	muscle
7	chr17:37556200-37559200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:37556400-37558800	Active TSS	NHDF-Ad	bronchial
9	chr17:37556400-37559000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:37556400-37559000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr17:37556400-37559000	Active TSS	Right Ventricle	heart
12	chr17:37556400-37559200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr17:37556400-37559800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr17:37556600-37558400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr17:37556600-37559000	Active TSS	H1 Cell Line	embryonic stem cell
16	chr17:37556600-37559000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr17:37556600-37559000	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr17:37556600-37559000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr17:37556600-37559000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr17:37556600-37559000	Active TSS	Left Ventricle	heart
21	chr17:37556600-37559000	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr17:37556600-37559200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr17:37556600-37559200	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr17:37556600-37559600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr17:37556800-37558800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr17:37556800-37558800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:37556800-37558800	Active TSS	H9 Cell Line	embryonic stem cell
28	chr17:37556800-37558800	Active TSS	Esophagus	oesophagus
29	chr17:37556800-37558800	Active TSS	Gastric	stomach
30	chr17:37556800-37558800	Active TSS	Placenta Amnion	Placenta Amnion
31	chr17:37556800-37559000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr17:37556800-37559000	Active TSS	Muscle Satellite Cultured Cells	--
33	chr17:37556800-37559000	Active TSS	Colon Smooth Muscle	Colon
34	chr17:37556800-37559000	Active TSS	Fetal Intestine Small	intestine
35	chr17:37556800-37559000	Active TSS	Lung	lung
36	chr17:37556800-37559000	Active TSS	Pancreas	Pancrea
37	chr17:37556800-37559000	Active TSS	Psoas Muscle	Psoas
38	chr17:37556800-37559400	Active TSS	Fetal Lung	lung
39	chr17:37557000-37558400	Active TSS	Stomach Mucosa	stomach
40	chr17:37557000-37558400	Bivalent/Poised TSS	HepG2	liver
41	chr17:37557000-37558800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr17:37557000-37558800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr17:37557000-37558800	Active TSS	Placenta	Placenta
44	chr17:37557000-37558800	Active TSS	Rectal Smooth Muscle	rectum
45	chr17:37557000-37559000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr17:37557000-37559000	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr17:37557000-37559000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr17:37557000-37559000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr17:37557000-37559000	Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr17:37557000-37559000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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