Variant report

Variant	rs9944411
Chromosome Location	chr17:37483599-37483600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 260 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:246)

rs_ID	r²[population]
rs10221223	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10432030	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10432031	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10445306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10491128	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10491129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11078893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11078894	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs11078895	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs11078896	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11078900	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078901	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11078902	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11078903	0.85[CEU][hapmap];0.81[ASN][1000 genomes]
rs11078906	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs11078907	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11650081	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11650146	0.84[EUR][1000 genomes]
rs11655972	0.83[ASN][1000 genomes]
rs11657899	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs11658678	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11867312	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11868029	0.80[EUR][1000 genomes]
rs11868133	0.85[ASN][1000 genomes]
rs11869109	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11869259	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11869323	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11870631	0.81[ASN][1000 genomes]
rs11871813	0.82[ASN][1000 genomes]
rs12150047	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs12150493	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12449852	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs12452509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12452682	0.81[ASN][1000 genomes]
rs12452880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12600625	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12600751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12936646	0.81[ASN][1000 genomes]
rs12936996	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs12937703	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12938099	0.81[CHB][hapmap]
rs12938268	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12939831	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12943928	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12947620	0.89[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12948560	0.83[EUR][1000 genomes]
rs12948906	0.81[ASN][1000 genomes]
rs12950186	0.87[CHB][hapmap]
rs12950666	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13341996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1966915	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1966916	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1971663	0.85[ASN][1000 genomes]
rs2024073	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2061338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2061342	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2100651	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2168785	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2302073	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs2338755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2338756	0.81[ASN][1000 genomes]
rs2338795	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2338797	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2338798	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2338799	0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs2338800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2338801	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28482878	0.87[ASN][1000 genomes]
rs2879258	0.88[CHB][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs2879259	0.81[ASN][1000 genomes]
rs28799952	0.82[ASN][1000 genomes]
rs33933929	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34363096	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34432983	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34473775	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34597616	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34627893	0.82[EUR][1000 genomes]
rs35112839	0.85[ASN][1000 genomes]
rs35285898	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35497503	0.84[ASN][1000 genomes]
rs35546703	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35667594	0.86[EUR][1000 genomes]
rs36064019	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3744348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3744349	0.82[CHB][hapmap]
rs3964723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4286140	0.82[ASN][1000 genomes]
rs4287601	0.84[ASN][1000 genomes]
rs4325601	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4390625	0.85[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4410117	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4462633	0.81[ASN][1000 genomes]
rs4511574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4516267	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs4794807	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4794808	0.82[ASN][1000 genomes]
rs4794810	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4795355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4795357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4795358	0.82[CHB][hapmap]
rs4795359	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4795361	0.81[EUR][1000 genomes]
rs4795362	0.84[EUR][1000 genomes]
rs4795364	0.90[ASN][1000 genomes]
rs4795369	0.89[ASW][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs4795379	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs55689507	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55722796	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57399933	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57448077	0.81[ASN][1000 genomes]
rs582088	0.85[ASN][1000 genomes]
rs582176	0.88[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs583980	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs584377	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs585961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs587343	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs587880	0.80[ASN][1000 genomes]
rs588193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs590051	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs593480	0.92[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs594794	0.85[ASN][1000 genomes]
rs597069	0.87[CHB][hapmap];0.92[CHD][hapmap];0.84[ASN][1000 genomes]
rs600010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs602282	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs602688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61161659	0.84[ASN][1000 genomes]
rs612209	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs620686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62074994	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs632202	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs632606	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs634365	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs638201	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs644173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs649180	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs650106	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6503500	0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs6503501	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6503502	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6503503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6503504	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs6503506	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6503507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6503513	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs6503515	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs651827	0.85[ASN][1000 genomes]
rs665413	0.81[ASN][1000 genomes]
rs667193	0.81[ASN][1000 genomes]
rs667239	0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs676882	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs677888	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs679995	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68178216	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs683948	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7208252	0.82[CHD][hapmap]
rs7208274	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7208487	0.82[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs7208714	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7210488	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7212621	0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs7215889	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7215983	0.82[ASN][1000 genomes]
rs7218074	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7218484	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7218670	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219014	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7220650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221117	0.81[ASN][1000 genomes]
rs7221875	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7222252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7223331	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223438	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7225096	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs73293051	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7359658	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7405667	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7501488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7503081	0.90[ASN][1000 genomes]
rs7503705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs752314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs755500	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs801417	0.80[ASN][1000 genomes]
rs801418	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs801419	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs801420	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs801426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs801427	0.81[CHB][hapmap];0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs801429	0.82[ASN][1000 genomes]
rs8065879	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8065963	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs8066704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8067302	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8067948	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8068427	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8069451	0.95[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8070695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071300	0.86[ASN][1000 genomes]
rs8072297	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8072351	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8073511	0.83[ASN][1000 genomes]
rs8073907	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes]
rs8076462	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8076494	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8076546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8077104	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8079303	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8079355	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8079560	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8079662	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8081033	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8081220	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8081338	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9646419	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs9747342	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9890198	0.85[ASN][1000 genomes]
rs9891892	0.87[ASN][1000 genomes]
rs9892055	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9892675	0.94[ASN][1000 genomes]
rs9893735	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs9894500	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9894586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894864	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9896913	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9898170	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9898773	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9899069	0.83[ASN][1000 genomes]
rs9901219	0.93[ASN][1000 genomes]
rs9903363	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9904919	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9905432	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9905617	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9906612	0.82[CHB][hapmap];0.87[CHD][hapmap];0.80[ASN][1000 genomes]
rs9908131	0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs9908760	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909064	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909304	0.87[ASN][1000 genomes]
rs9912212	0.83[ASN][1000 genomes]
rs9912310	0.87[ASN][1000 genomes]
rs9913320	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9916302	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9944459	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
7	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
8	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
9	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
10	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv510709	chr17:37438419-37508395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs9944411	C17orf50	cis	parietal	SCAN
rs9944411	PGAP3	cis	Thyroid	GTEx
rs9944411	PIGW	cis	parietal	SCAN
rs9944411	NEUROD2	cis	parietal	SCAN
rs9944411	DHRS11	cis	cerebellum	SCAN
rs9944411	PGAP3	cis	cerebellum	SCAN
rs9944411	PGAP3	cis	Heart Left Ventricle	GTEx
rs9944411	SLFN14	cis	parietal	SCAN
rs9944411	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs9944411	CCL4	cis	cerebellum	SCAN
rs9944411	RDM1	cis	cerebellum	SCAN

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37436000-37496200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:37436800-37497800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:37453400-37507800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:37454000-37511600	Weak transcription	Hela-S3	cervix
5	chr17:37455200-37499800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr17:37455400-37485200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:37455400-37495600	Weak transcription	Right Ventricle	heart
8	chr17:37455600-37484800	Weak transcription	Fetal Kidney	kidney
9	chr17:37455800-37495600	Weak transcription	Brain Germinal Matrix	brain
10	chr17:37456200-37499400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr17:37457600-37497800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr17:37458000-37495000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:37459400-37491000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr17:37459400-37495600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:37460200-37486800	Weak transcription	Fetal Intestine Large	intestine
16	chr17:37460200-37497600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:37460400-37498400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:37461000-37497400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr17:37461000-37497600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr17:37461200-37485000	Weak transcription	HepG2	liver
21	chr17:37461200-37495200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr17:37461200-37495400	Weak transcription	Thymus	Thymus
23	chr17:37461200-37515400	Weak transcription	Lung	lung
24	chr17:37461400-37522000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr17:37461800-37485200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr17:37463800-37485000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr17:37463800-37490800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr17:37463800-37495000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr17:37463800-37528200	Weak transcription	HSMMtube	muscle
30	chr17:37467000-37489000	Weak transcription	Fetal Intestine Small	intestine
31	chr17:37472400-37485000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr17:37472400-37497600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr17:37472800-37487800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr17:37472800-37495200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr17:37472800-37497600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr17:37472800-37499400	Weak transcription	Fetal Muscle Leg	muscle
37	chr17:37473200-37488400	Weak transcription	Primary T cells from cord blood	blood
38	chr17:37473200-37488600	Weak transcription	Fetal Stomach	stomach
39	chr17:37478200-37490600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr17:37481600-37495400	Weak transcription	Fetal Thymus	thymus
41	chr17:37482000-37483800	Enhancers	Stomach Mucosa	stomach
42	chr17:37482200-37485000	Weak transcription	Psoas Muscle	Psoas
43	chr17:37482400-37494800	Weak transcription	Liver	Liver
44	chr17:37482400-37497800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr17:37482600-37490600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr17:37482600-37490800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr17:37482800-37484600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr17:37482800-37484600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr17:37482800-37490800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr17:37482800-37491200	Weak transcription	Primary B cells from cord blood	blood

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