Variant report

Variant	rs6503515
Chromosome Location	chr17:37606433-37606434
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37123131..37124691-chr17:37606026..37607760,2	MCF-7	breast:
2	chr17:37556967..37560024-chr17:37605171..37608348,4	K562	blood:
3	chr17:37557413..37559525-chr17:37605171..37609188,5	K562	blood:
4	chr17:37356852..37358951-chr17:37605399..37608667,3	MCF-7	breast:
5	chr17:37604386..37611889-chr17:37616048..37620931,25	K562	blood:
6	chr17:37561135..37562914-chr17:37605744..37607400,2	MCF-7	breast:
7	chr17:37605541..37607349-chr17:37610739..37612526,2	K562	blood:
8	chr17:37356998..37359226-chr17:37605590..37607414,2	K562	blood:
9	chr17:37605291..37610010-chr17:37614517..37620203,14	MCF-7	breast:
10	chr17:37604313..37610125-chr17:37615155..37621784,15	MCF-7	breast:
11	chr17:37604291..37611614-chr17:37614953..37621274,26	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108298	Chromatin interaction
ENSG00000266469	Chromatin interaction
ENSG00000167258	Chromatin interaction
ENSG00000108306	Chromatin interaction
ENSG00000204952	Chromatin interaction

Extended variants
information (count: 215 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs10221223	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10445305	0.83[EUR][1000 genomes]
rs10445306	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10445307	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10491128	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10491129	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10775391	0.82[ASN][1000 genomes]
rs1077715	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11078898	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11078900	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078901	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11078902	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078903	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078904	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078905	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11078906	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078907	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078910	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11078911	0.84[ASN][1000 genomes]
rs11078912	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11078913	0.84[ASN][1000 genomes]
rs11650081	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11650146	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11651089	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11657899	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11658678	0.82[ASN][1000 genomes]
rs11659010	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11867312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11868029	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11868030	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11868133	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11869109	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11869259	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11869323	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11870631	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12150047	0.86[ASN][1000 genomes]
rs12150493	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12449852	0.85[ASN][1000 genomes]
rs12451586	0.83[AMR][1000 genomes]
rs12452509	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12452682	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12452880	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12453397	0.80[AMR][1000 genomes]
rs12600625	0.90[ASN][1000 genomes]
rs12600751	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12936646	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12936996	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12937703	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12938099	0.86[ASN][1000 genomes]
rs12938268	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12939831	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12942352	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12942360	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12943928	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12947281	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12947600	0.87[AFR][1000 genomes]
rs12947620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12948560	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12948906	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12950666	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12952384	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13341996	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2018026	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2024073	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2338797	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2338798	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2338800	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2338801	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34363096	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34432983	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34597616	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34627893	0.81[EUR][1000 genomes]
rs34957982	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35112839	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35285898	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35497503	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35546703	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35667594	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36064019	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3889368	0.82[ASN][1000 genomes]
rs4286140	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4390625	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4410117	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4462633	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4511574	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794807	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794809	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4794810	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794813	0.84[ASN][1000 genomes]
rs4795356	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795357	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4795358	0.83[ASN][1000 genomes]
rs4795359	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4795361	0.85[EUR][1000 genomes]
rs4795362	0.84[EUR][1000 genomes]
rs4795364	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4795367	0.86[ASN][1000 genomes]
rs4795369	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4795371	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4795376	0.84[ASN][1000 genomes]
rs4795377	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55660616	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55722796	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57399933	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57448077	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs583980	0.82[EUR][1000 genomes]
rs585961	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs587343	0.81[ASN][1000 genomes]
rs588193	0.81[ASN][1000 genomes]
rs593480	0.81[ASN][1000 genomes]
rs602688	0.81[ASN][1000 genomes]
rs61161659	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs612209	0.81[EUR][1000 genomes]
rs620686	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62075056	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62077463	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62077464	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs632202	0.81[ASN][1000 genomes]
rs638201	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs650106	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6503502	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6503503	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6503506	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6503507	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6503513	0.93[ASN][1000 genomes]
rs6503517	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6503518	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs677888	0.81[ASN][1000 genomes]
rs679995	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68178216	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs683948	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7208252	0.83[ASN][1000 genomes]
rs7208274	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7208714	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7210488	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7212715	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7212868	0.87[AFR][1000 genomes]
rs7218074	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7218484	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7218670	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7219014	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7219294	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7220650	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7221875	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7223331	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7223438	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7223896	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7225096	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73293051	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7359658	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7405667	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7406928	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7501488	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7503514	0.84[ASN][1000 genomes]
rs7503705	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs801419	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs801420	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs801426	0.81[ASN][1000 genomes]
rs8065879	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8065963	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8066704	0.86[ASN][1000 genomes]
rs8067302	0.86[ASN][1000 genomes]
rs8067511	0.86[ASN][1000 genomes]
rs8067884	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8067948	0.86[ASN][1000 genomes]
rs8068427	0.85[ASN][1000 genomes]
rs8069451	0.84[EUR][1000 genomes]
rs8070695	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8072297	0.83[ASN][1000 genomes]
rs8072351	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8074276	0.84[ASN][1000 genomes]
rs8074855	0.86[ASN][1000 genomes]
rs8076494	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8076546	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8077104	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8079303	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8079560	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8081033	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8081220	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8081780	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9646419	0.86[ASN][1000 genomes]
rs9747342	0.81[ASN][1000 genomes]
rs9747983	0.80[ASN][1000 genomes]
rs9892055	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9892675	0.92[ASN][1000 genomes]
rs9894500	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9894586	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9894864	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9896913	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9898170	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9898773	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9901219	0.93[ASN][1000 genomes]
rs9903363	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9904334	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9904919	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9905432	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9905617	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9906612	0.80[ASN][1000 genomes]
rs9908760	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9909064	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9913320	0.81[EUR][1000 genomes]
rs9916302	0.83[ASN][1000 genomes]
rs9944411	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
11	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6503515	PGAP3	cis	Heart Left Ventricle	GTEx
rs6503515	CRKRS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37559000-37606600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr17:37571600-37606600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr17:37584200-37606600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr17:37590800-37606600	Weak transcription	Fetal Heart	heart
5	chr17:37593800-37606600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:37598400-37606600	Weak transcription	Psoas Muscle	Psoas
7	chr17:37598800-37606600	Weak transcription	Aorta	Aorta
8	chr17:37599400-37606800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:37603200-37606600	Weak transcription	Colonic Mucosa	Colon
10	chr17:37603200-37606800	Weak transcription	Pancreas	Pancrea
11	chr17:37603400-37606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:37603400-37606600	Weak transcription	HSMMtube	muscle
13	chr17:37604200-37606600	Weak transcription	Brain Angular Gyrus	brain
14	chr17:37604200-37606600	Weak transcription	Ovary	ovary
15	chr17:37604200-37606600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr17:37604200-37606800	Weak transcription	Esophagus	oesophagus
17	chr17:37604600-37606600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr17:37604800-37606600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr17:37604800-37606600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr17:37604800-37606600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr17:37604800-37607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr17:37605000-37606800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr17:37605200-37606600	Enhancers	Liver	Liver
24	chr17:37605400-37606600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr17:37605400-37606800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr17:37605400-37607000	Enhancers	Spleen	Spleen
27	chr17:37605600-37606600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr17:37605600-37606600	Enhancers	Fetal Muscle Leg	muscle
29	chr17:37605600-37606600	Genic enhancers	Fetal Stomach	stomach
30	chr17:37605600-37606800	Weak transcription	Gastric	stomach
31	chr17:37606000-37606800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr17:37606000-37606800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr17:37606200-37606600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr17:37606200-37606600	Enhancers	Fetal Brain Male	brain
35	chr17:37606200-37606600	Active TSS	HepG2	liver
36	chr17:37606200-37606800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr17:37606200-37606800	Enhancers	Lung	lung
38	chr17:37606200-37607000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr17:37606200-37607000	Enhancers	Small Intestine	intestine
40	chr17:37606200-37608400	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr17:37606400-37606600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr17:37606400-37606600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr17:37606400-37606600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr17:37606400-37606600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr17:37606400-37606600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr17:37606400-37606600	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr17:37606400-37606600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr17:37606400-37606600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr17:37606400-37606600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr17:37606400-37606600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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