Variant report

Variant	rs11078913
Chromosome Location	chr17:37671714-37671715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37649769..37652611-chr17:37670214..37672118,2	MCF-7	breast:
2	chr17:37669321..37671992-chr17:37672214..37673843,2	K562	blood:

Extended variants
information (count: 164 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10445306	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10491128	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs1053651	0.95[CEU][hapmap]
rs1054488	0.85[ASN][1000 genomes]
rs10775391	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1077715	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10852933	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11078898	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11078900	0.84[ASN][1000 genomes]
rs11078901	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11078902	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11078903	0.81[CEU][hapmap];0.86[ASN][1000 genomes]
rs11078904	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11078905	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11078906	0.83[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11078907	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11078910	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078912	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078915	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11654018	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11654935	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11655531	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11657058	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs11657153	0.83[ASN][1000 genomes]
rs11657899	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11658219	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11658678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11867312	0.84[ASN][1000 genomes]
rs11868029	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11868030	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11870631	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12150047	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs12449852	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs12450559	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12452509	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs12452682	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12452880	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12453682	0.81[CEU][hapmap]
rs12600751	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12936646	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12936996	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12937013	0.86[ASN][1000 genomes]
rs12938099	0.81[CHB][hapmap]
rs12942352	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12942360	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12942391	0.81[ASN][1000 genomes]
rs12943928	0.83[ASN][1000 genomes]
rs12947281	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12947506	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs12947620	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.84[ASN][1000 genomes]
rs12948906	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12950666	0.85[ASN][1000 genomes]
rs12952384	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13341996	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs1619021	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1874226	0.81[ASN][1000 genomes]
rs1874228	0.90[CEU][hapmap]
rs2018026	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2271308	0.95[CEU][hapmap]
rs2303316	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2338799	0.87[CHB][hapmap]
rs2338800	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs34363096	0.82[ASN][1000 genomes]
rs34957982	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35112839	0.83[ASN][1000 genomes]
rs35335692	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35497503	0.86[ASN][1000 genomes]
rs364989	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3889368	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs412430	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4239222	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4286140	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4332770	0.81[ASN][1000 genomes]
rs4357971	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4390625	0.81[CEU][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.86[ASN][1000 genomes]
rs4392104	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs439537	0.81[ASN][1000 genomes]
rs4462633	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4488484	0.81[ASN][1000 genomes]
rs4511574	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs4591174	0.82[ASN][1000 genomes]
rs4794810	0.84[ASN][1000 genomes]
rs4794813	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794814	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4795356	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs4795357	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4795358	0.82[CHB][hapmap]
rs4795369	0.94[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs4795371	0.84[ASN][1000 genomes]
rs4795375	0.85[ASN][1000 genomes]
rs4795376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4795377	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4795379	0.82[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs4795381	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4795382	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795384	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4795385	0.81[ASN][1000 genomes]
rs4795388	0.90[CEU][hapmap]
rs55660616	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55722796	0.81[ASN][1000 genomes]
rs57448077	0.86[ASN][1000 genomes]
rs61161659	0.82[ASN][1000 genomes]
rs62077463	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62077464	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6503500	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs6503503	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6503504	0.81[CHB][hapmap]
rs6503507	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs6503513	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6503515	0.84[ASN][1000 genomes]
rs6503517	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6503518	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6503519	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6503521	0.81[ASN][1000 genomes]
rs7208252	0.85[CHD][hapmap]
rs7208487	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs7212621	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs7216086	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7219014	0.83[ASN][1000 genomes]
rs7220650	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs7221875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7223438	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs7224067	0.83[ASN][1000 genomes]
rs7225096	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7405770	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7406928	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7501488	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs7503069	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7503377	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs7503514	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7503705	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065963	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8066704	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8067884	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069074	0.82[CHB][hapmap];0.90[CHD][hapmap];0.85[ASN][1000 genomes]
rs8069451	0.90[CEU][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap]
rs8070695	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs8075737	0.81[ASN][1000 genomes]
rs8076494	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs8076546	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs8081528	0.86[ASN][1000 genomes]
rs8081780	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8182252	0.81[ASN][1000 genomes]
rs903507	0.81[ASN][1000 genomes]
rs9646419	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs9892055	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs9894586	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9904919	0.95[CEU][hapmap]
rs9906612	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs9908131	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs9915323	0.95[CEU][hapmap]
rs9944411	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs9972882	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
4	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
6	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
9	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs11078913	SLFN14	cis	parietal	SCAN
rs11078913	PGAP3	cis	cerebellum	SCAN
rs11078913	PIGW	cis	parietal	SCAN
rs11078913	PNMT	cis	parietal	SCAN
rs11078913	NEUROD2	cis	parietal	SCAN
rs11078913	PGAP3	cis	Heart Left Ventricle	GTEx
rs11078913	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs11078913	DHRS11	cis	cerebellum	SCAN
rs11078913	CCL4	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37624000-37680400	Weak transcription	Fetal Brain Male	brain
2	chr17:37624000-37690600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:37626600-37690600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:37628400-37682200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:37634200-37688600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr17:37635200-37680600	Weak transcription	Fetal Heart	heart
7	chr17:37636200-37685800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr17:37640400-37691000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr17:37642000-37689600	Strong transcription	Fetal Thymus	thymus
10	chr17:37642600-37680400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:37643200-37688600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr17:37643400-37689000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr17:37644000-37685200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:37644400-37688200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:37645000-37689000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr17:37645000-37689600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr17:37645400-37685600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr17:37645600-37689200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:37646000-37684800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:37646000-37688400	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr17:37646400-37688200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr17:37646400-37688600	Strong transcription	Fetal Intestine Large	intestine
23	chr17:37646400-37689800	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:37646600-37687200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:37646600-37688200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr17:37646600-37688800	Strong transcription	Liver	Liver
27	chr17:37646600-37689600	Strong transcription	Dnd41	blood
28	chr17:37646600-37690200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr17:37646800-37682200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:37646800-37683800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr17:37646800-37685600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr17:37646800-37686200	Strong transcription	Adipose Nuclei	Adipose
33	chr17:37646800-37688200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr17:37646800-37688600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr17:37646800-37688600	Strong transcription	Placenta	Placenta
36	chr17:37646800-37689000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr17:37646800-37689000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr17:37646800-37689000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr17:37646800-37689200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr17:37646800-37689200	Strong transcription	HepG2	liver
41	chr17:37646800-37690000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr17:37653800-37688400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr17:37654000-37675000	Strong transcription	Primary hematopoietic stem cells	blood
44	chr17:37654200-37673400	Weak transcription	Pancreas	Pancrea
45	chr17:37655400-37689200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr17:37655600-37689600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr17:37655600-37689800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr17:37656000-37688800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr17:37656200-37682200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr17:37657400-37689200	Strong transcription	Duodenum Mucosa	Duodenum

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