Variant report

Variant	rs677888
Chromosome Location	chr17:37461018-37461019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37459079..37461538-chr17:37464843..37466379,2	MCF-7	breast:

Extended variants
information (count: 203 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs10221223	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10432030	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10432031	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10445306	0.82[ASN][1000 genomes]
rs10491128	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10491129	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078893	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11078894	0.86[ASN][1000 genomes]
rs11078895	0.88[ASN][1000 genomes]
rs11078896	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11078897	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11078898	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11078900	0.81[ASN][1000 genomes]
rs11650081	0.81[ASN][1000 genomes]
rs11655972	0.88[ASN][1000 genomes]
rs11867312	0.81[ASN][1000 genomes]
rs11868133	0.80[ASN][1000 genomes]
rs11869109	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11869259	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11869323	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12150493	0.86[ASN][1000 genomes]
rs12452509	0.86[ASN][1000 genomes]
rs12452880	0.84[ASN][1000 genomes]
rs12600625	0.87[ASN][1000 genomes]
rs12600751	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12937703	0.83[ASN][1000 genomes]
rs12938268	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12939831	0.82[ASN][1000 genomes]
rs12947620	0.81[ASN][1000 genomes]
rs12950186	0.84[ASN][1000 genomes]
rs13341996	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1966915	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1966916	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2024073	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061338	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2061342	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2100651	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2168785	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2302073	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2338755	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2338756	0.86[ASN][1000 genomes]
rs2338795	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2338797	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2338798	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2338800	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2338801	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28482878	0.81[ASN][1000 genomes]
rs2879258	0.88[ASN][1000 genomes]
rs2879259	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs33933929	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34363096	0.82[ASN][1000 genomes]
rs34432983	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34473775	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34597616	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35285898	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35546703	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36064019	0.84[ASN][1000 genomes]
rs3744348	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3744349	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs3964723	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4325601	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4410117	0.86[ASN][1000 genomes]
rs4511574	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4516267	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4794807	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4794810	0.81[ASN][1000 genomes]
rs4795355	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4795356	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4795357	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795359	0.86[ASN][1000 genomes]
rs4795364	0.85[ASN][1000 genomes]
rs55689507	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57399933	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57933226	0.85[ASN][1000 genomes]
rs582088	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs582176	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs583980	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs584377	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs585961	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587343	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587880	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs588193	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs590051	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs593480	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594794	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs597069	0.89[ASN][1000 genomes]
rs600010	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs602282	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs602688	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612209	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs620686	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62074994	0.86[ASN][1000 genomes]
rs632202	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632606	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs634365	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs638201	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644173	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs649180	0.88[ASN][1000 genomes]
rs650106	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6503500	0.85[ASN][1000 genomes]
rs6503501	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6503502	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6503503	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6503506	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6503507	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6503513	0.87[ASN][1000 genomes]
rs6503515	0.81[ASN][1000 genomes]
rs651827	0.90[ASN][1000 genomes]
rs665413	0.87[ASN][1000 genomes]
rs667193	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs667239	0.90[ASN][1000 genomes]
rs679995	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68178216	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs683948	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208274	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7208714	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7210488	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7215889	0.82[ASN][1000 genomes]
rs7218074	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7218484	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7218670	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7220650	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7221875	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7223331	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7223438	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73293051	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7359658	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7405667	0.86[ASN][1000 genomes]
rs7501488	0.86[ASN][1000 genomes]
rs7503081	0.85[ASN][1000 genomes]
rs752314	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs755500	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs801417	0.86[ASN][1000 genomes]
rs801418	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs801419	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801420	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801426	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801427	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs801429	0.87[ASN][1000 genomes]
rs801430	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8065879	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8066704	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8067302	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8067948	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8068427	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8069451	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8070695	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8071300	0.80[ASN][1000 genomes]
rs8072297	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8072351	0.86[ASN][1000 genomes]
rs8073907	0.87[ASN][1000 genomes]
rs8076494	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8076546	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8077104	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8079303	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8079355	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8079560	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8079590	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8079662	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8081033	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8081220	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081338	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9747342	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9890198	0.90[ASN][1000 genomes]
rs9891892	0.81[ASN][1000 genomes]
rs9892055	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9892675	0.88[ASN][1000 genomes]
rs9893735	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9894500	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9894586	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9894864	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9896913	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9898170	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9898773	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9901219	0.87[ASN][1000 genomes]
rs9903363	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9904334	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904919	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9905432	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9905617	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9908760	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9909064	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9909304	0.81[ASN][1000 genomes]
rs9912310	0.81[ASN][1000 genomes]
rs9913320	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9916302	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9944411	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9944459	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
9	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
12	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv510709	chr17:37438419-37508395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs677888	PGAP3	cis	Thyroid	GTEx
rs677888	CRKRS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37408000-37463000	Weak transcription	Small Intestine	intestine
2	chr17:37409800-37464000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:37425000-37473000	Weak transcription	Pancreas	Pancrea
4	chr17:37426800-37468600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:37430800-37462600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:37431200-37462600	Weak transcription	Colon Smooth Muscle	Colon
7	chr17:37431400-37473400	Weak transcription	Esophagus	oesophagus
8	chr17:37435600-37469400	Weak transcription	Gastric	stomach
9	chr17:37436000-37496200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:37436800-37497800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:37437800-37462400	Weak transcription	Brain Anterior Caudate	brain
12	chr17:37438400-37461800	Weak transcription	A549	lung
13	chr17:37438800-37463000	Weak transcription	NHDF-Ad	bronchial
14	chr17:37439000-37462800	Weak transcription	NH-A	brain
15	chr17:37439200-37462600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr17:37439200-37462800	Weak transcription	Fetal Heart	heart
17	chr17:37444000-37478400	Weak transcription	Psoas Muscle	Psoas
18	chr17:37444600-37462600	Strong transcription	Fetal Intestine Small	intestine
19	chr17:37448400-37461800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr17:37452600-37461200	Strong transcription	Fetal Thymus	thymus
21	chr17:37453400-37461200	Strong transcription	Primary T cells from cord blood	blood
22	chr17:37453400-37463200	Weak transcription	NHLF	lung
23	chr17:37453400-37507800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr17:37453600-37461200	Strong transcription	Fetal Stomach	stomach
25	chr17:37453600-37461200	Strong transcription	Thymus	Thymus
26	chr17:37454000-37511600	Weak transcription	Hela-S3	cervix
27	chr17:37454600-37473600	Weak transcription	Brain Substantia Nigra	brain
28	chr17:37454800-37464400	Weak transcription	Aorta	Aorta
29	chr17:37454800-37471800	Weak transcription	Left Ventricle	heart
30	chr17:37454800-37473800	Weak transcription	Spleen	Spleen
31	chr17:37454800-37474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr17:37455000-37463000	Weak transcription	Brain Angular Gyrus	brain
33	chr17:37455000-37463200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr17:37455000-37463200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr17:37455000-37464600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr17:37455200-37462400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr17:37455200-37463200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr17:37455200-37499800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr17:37455400-37462400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr17:37455400-37477400	Weak transcription	Ovary	ovary
41	chr17:37455400-37485200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr17:37455400-37495600	Weak transcription	Right Ventricle	heart
43	chr17:37455600-37462200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr17:37455600-37462200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr17:37455600-37462200	Weak transcription	Adipose Nuclei	Adipose
46	chr17:37455600-37462600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr17:37455600-37462600	Weak transcription	Osteobl	bone
48	chr17:37455600-37484800	Weak transcription	Fetal Kidney	kidney
49	chr17:37455800-37463200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr17:37455800-37495600	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links