Variant report

Variant	rs34473775
Chromosome Location	chr17:37396201-37396202
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:52)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:52 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr17:37395929-37396240	K562	blood:	n/a	n/a
2	RAD21	chr17:37395722-37396302	ECC-1	luminal epithelium:	n/a	n/a
3	CTCF	chr17:37396200-37396350	GM12867	blood:	n/a	n/a
4	CREB1	chr17:37395861-37396262	H1-hESC	embryonic stem cell:	n/a	n/a
5	GABPA	chr17:37395833-37396274	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr17:37395793-37396222	HepG2	liver:	n/a	n/a
7	RAD21	chr17:37395746-37396225	ECC-1	luminal epithelium:	n/a	n/a
8	TCF12	chr17:37395908-37396235	GM12878	blood:	n/a	n/a
9	CTCF	chr17:37395836-37396234	K562	blood:	n/a	n/a
10	CTCF	chr17:37396060-37396210	HCM	heart:	n/a	n/a
11	CTCF	chr17:37395782-37396245	A549	lung:	n/a	n/a
12	POLR2A	chr17:37395804-37396425	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr17:37395839-37396229	GM12878	blood:	n/a	n/a
14	SMC3	chr17:37395640-37396520	SK-N-SH	brain:	n/a	n/a
15	RAD21	chr17:37395802-37396258	HepG2	liver:	n/a	n/a
16	CTCF	chr17:37395870-37396202	GM12891	blood:	n/a	n/a
17	TBP	chr17:37395988-37396228	H1-hESC	embryonic stem cell:	n/a	n/a
18	CTCF	chr17:37395769-37396208	T-47D	breast:	n/a	n/a
19	CTCF	chr17:37395564-37396511	HCT-116	colon:	n/a	n/a
20	RUNX3	chr17:37395847-37396212	GM12878	blood:	n/a	n/a
21	TCF12	chr17:37395818-37396243	H1-hESC	embryonic stem cell:	n/a	n/a
22	MAX	chr17:37395749-37396297	H1-hESC	embryonic stem cell:	n/a	n/a
23	ZNF384	chr17:37395904-37396204	K562	blood:	n/a	n/a
24	HDAC2	chr17:37395829-37396217	H1-hESC	embryonic stem cell:	n/a	n/a
25	JUND	chr17:37395921-37396201	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr17:37395808-37396211	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr17:37395572-37396467	A549	lung:	n/a	n/a
28	MAX	chr17:37395787-37396204	H1-hESC	embryonic stem cell:	n/a	n/a
29	TCF3	chr17:37395903-37396220	GM12878	blood:	n/a	chr17:37395969-37395985
30	CTCF	chr17:37395827-37396216	T-47D	breast:	n/a	n/a
31	CTCF	chr17:37395699-37396284	K562	blood:	n/a	n/a
32	CTCF	chr17:37395788-37396256	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr17:37395954-37396238	H1-hESC	embryonic stem cell:	n/a	n/a
34	ZEB1	chr17:37395770-37396268	GM12878	blood:	n/a	chr17:37395971-37395983 chr17:37395973-37395982
35	CTCF	chr17:37395618-37396438	SK-N-SH	brain:	n/a	n/a
36	MAX	chr17:37395715-37396298	ECC-1	luminal epithelium:	n/a	n/a
37	RAD21	chr17:37395836-37396207	H1-hESC	embryonic stem cell:	n/a	n/a
38	RCOR1	chr17:37395972-37396202	HepG2	liver:	n/a	n/a
39	CTCF	chr17:37395795-37396233	MCF-7	breast:	n/a	n/a
40	ZNF143	chr17:37395815-37396322	H1-hESC	embryonic stem cell:	n/a	n/a
41	USF2	chr17:37395896-37396234	H1-hESC	embryonic stem cell:	n/a	n/a
42	BACH1	chr17:37395882-37396338	H1-hESC	embryonic stem cell:	n/a	n/a
43	RAD21	chr17:37395712-37396227	A549	lung:	n/a	n/a
44	CTCF	chr17:37395889-37396208	ECC-1	luminal epithelium:	n/a	n/a
45	TAF1	chr17:37395894-37396294	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr17:37395825-37396249	K562	blood:	n/a	n/a
47	SMC3	chr17:37395816-37396224	K562	blood:	n/a	n/a
48	RAD21	chr17:37395869-37396244	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr17:37395783-37396205	MCF-7	breast:	n/a	n/a
50	PAX5	chr17:37395967-37396262	GM12892	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37363131..37364921-chr17:37394914..37397256,2	K562	blood:
2	chr17:37385522..37388485-chr17:37394783..37397321,2	K562	blood:
3	chr17:37362184..37364850-chr17:37394786..37397446,3	MCF-7	breast:
4	chr17:37362968..37363903-chr17:37395593..37396216,4	MCF-7	breast:
5	chr17:37363220..37363898-chr17:37395586..37396469,3	K562	blood:
6	chr17:37395833..37396511-chr17:37683200..37684128,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265460	TF binding region

Extended variants
information (count: 180 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10221223	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10432030	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10432031	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10491128	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10491129	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11078893	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11078894	0.88[ASN][1000 genomes]
rs11078895	0.86[ASN][1000 genomes]
rs11078896	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078897	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11078898	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11655972	0.86[ASN][1000 genomes]
rs11867312	0.81[EUR][1000 genomes]
rs11869109	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11869259	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11869323	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12150493	0.80[EUR][1000 genomes]
rs12452509	0.83[EUR][1000 genomes]
rs12452880	0.80[EUR][1000 genomes]
rs12600751	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12938268	0.82[EUR][1000 genomes]
rs12950186	0.85[ASN][1000 genomes]
rs13341996	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1966915	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1966916	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2024073	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2061338	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2061342	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2100651	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2168785	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2302073	0.85[ASN][1000 genomes]
rs2338755	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2338756	0.82[ASN][1000 genomes]
rs2338795	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2338797	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2338798	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2338800	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2338801	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2879258	0.86[ASN][1000 genomes]
rs2879259	0.85[ASN][1000 genomes]
rs33933929	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34363096	0.80[EUR][1000 genomes]
rs34432983	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34597616	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35285898	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35546703	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35667594	0.81[EUR][1000 genomes]
rs3744348	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3964723	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4325601	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4375688	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4410117	0.80[EUR][1000 genomes]
rs4511574	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4516267	0.85[ASN][1000 genomes]
rs4794807	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4794810	0.81[EUR][1000 genomes]
rs4795355	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4795356	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4795357	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4795359	0.83[EUR][1000 genomes]
rs55689507	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57399933	0.89[EUR][1000 genomes]
rs57933226	0.83[ASN][1000 genomes]
rs582088	0.85[ASN][1000 genomes]
rs582176	0.85[ASN][1000 genomes]
rs583980	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs584377	0.81[ASN][1000 genomes]
rs585961	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs587343	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs587880	0.84[ASN][1000 genomes]
rs588193	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs590051	0.85[ASN][1000 genomes]
rs593480	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs594794	0.85[ASN][1000 genomes]
rs597069	0.84[ASN][1000 genomes]
rs600010	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs602282	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs602688	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs612209	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs620686	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62074994	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs632202	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs632606	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs634365	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs638201	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs644173	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs649180	0.83[ASN][1000 genomes]
rs650106	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6503501	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6503502	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6503503	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6503506	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6503507	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6503513	0.80[ASN][1000 genomes]
rs651827	0.85[ASN][1000 genomes]
rs665413	0.81[ASN][1000 genomes]
rs667193	0.81[ASN][1000 genomes]
rs667239	0.85[ASN][1000 genomes]
rs677888	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs679995	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68178216	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs683948	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7208274	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7208714	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7210488	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7215889	0.82[EUR][1000 genomes]
rs7218074	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7218484	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7218670	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7220650	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7221875	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7223331	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7223438	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73293051	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7359658	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7405667	0.81[EUR][1000 genomes]
rs7501488	0.83[EUR][1000 genomes]
rs752314	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs755500	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs801417	0.80[ASN][1000 genomes]
rs801418	0.85[ASN][1000 genomes]
rs801419	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs801420	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs801426	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs801427	0.82[ASN][1000 genomes]
rs801429	0.82[ASN][1000 genomes]
rs8065879	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8066704	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8067302	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8067948	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8068427	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8069451	0.90[EUR][1000 genomes]
rs8070695	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8072297	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8073907	0.85[ASN][1000 genomes]
rs8076494	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8076546	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8077104	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8079303	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8079355	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8079560	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8079590	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8079662	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8081033	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8081220	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8081338	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9747342	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9890198	0.85[ASN][1000 genomes]
rs9892055	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9892675	0.81[ASN][1000 genomes]
rs9893735	0.85[ASN][1000 genomes]
rs9894500	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9894586	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9894864	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9896913	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9898170	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9898773	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9901219	0.80[ASN][1000 genomes]
rs9903363	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9904334	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9904919	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9905432	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9905617	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9908760	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9909064	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9913320	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9916302	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9944411	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv908203	chr17:37327165-37405657	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
11	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
12	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34473775	CRKRS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37391400-37396400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:37393800-37396600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:37394400-37396400	Enhancers	Primary B cells from peripheral blood	blood
4	chr17:37394600-37396400	Enhancers	Spleen	Spleen
5	chr17:37394600-37401000	Weak transcription	Fetal Lung	lung
6	chr17:37394800-37396400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:37395000-37396400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:37395000-37396400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:37395000-37396400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:37395000-37400400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr17:37395000-37413000	Weak transcription	HSMMtube	muscle
12	chr17:37395000-37414600	Weak transcription	Psoas Muscle	Psoas
13	chr17:37395200-37396400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr17:37395200-37396400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:37395200-37396400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr17:37395200-37396600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr17:37395200-37399800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr17:37395200-37400200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr17:37395200-37400400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr17:37395200-37400400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr17:37395200-37400400	Weak transcription	NHDF-Ad	bronchial
22	chr17:37395200-37409000	Weak transcription	Brain Anterior Caudate	brain
23	chr17:37395200-37409200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr17:37395200-37417000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr17:37395400-37396400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr17:37395400-37396400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr17:37395400-37396400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr17:37395400-37396600	Enhancers	Primary T cells fromperipheralblood	blood
29	chr17:37395400-37400400	Weak transcription	HSMM	muscle
30	chr17:37395400-37400800	Weak transcription	HMEC	breast
31	chr17:37395600-37396400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
32	chr17:37395600-37396400	Bivalent Enhancer	Stomach Mucosa	stomach
33	chr17:37395800-37396400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr17:37395800-37396400	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr17:37395800-37396400	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr17:37395800-37396400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr17:37395800-37396400	Enhancers	Thymus	Thymus
38	chr17:37395800-37396600	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr17:37395800-37403800	Weak transcription	A549	lung
40	chr17:37396000-37396400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr17:37396000-37396400	Enhancers	Primary B cells from cord blood	blood
42	chr17:37396000-37396400	Enhancers	Fetal Thymus	thymus
43	chr17:37396000-37396400	ZNF genes & repeats	Lung	lung
44	chr17:37396000-37396400	Enhancers	GM12878-XiMat	blood
45	chr17:37396000-37396600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr17:37396000-37399200	Weak transcription	Dnd41	blood
47	chr17:37396000-37400800	Weak transcription	Hela-S3	cervix
48	chr17:37396000-37400800	Weak transcription	K562	blood
49	chr17:37396000-37409200	Weak transcription	Pancreas	Pancrea
50	chr17:37396200-37396400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links