Variant report

Variant	rs2168785
Chromosome Location	chr17:37407135-37407136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37365401..37368145-chr17:37404465..37407253,2	MCF-7	breast:
2	chr17:37407020..37409663-chr17:37431411..37433036,2	K562	blood:
3	chr17:37402739..37404636-chr17:37405681..37408393,2	K562	blood:

Extended variants
information (count: 205 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10221223	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10432030	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10432031	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10445306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10491128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10491129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11078893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11078894	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs11078895	0.88[CHB][hapmap];0.90[ASN][1000 genomes]
rs11078896	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11650146	0.80[EUR][1000 genomes]
rs11655972	0.90[ASN][1000 genomes]
rs11867312	0.83[EUR][1000 genomes]
rs11869109	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11869259	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11869323	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12150047	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs12150493	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12452509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12452880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12600625	0.85[ASN][1000 genomes]
rs12600751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12937703	0.81[ASN][1000 genomes]
rs12938268	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12939831	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12947620	0.89[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs12950186	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs13341996	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1966915	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966916	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024073	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2061338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061342	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2100651	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2302073	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs2338755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2338756	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2338795	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2338797	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2338798	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2338799	0.87[CHB][hapmap]
rs2338800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2338801	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2879258	0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs2879259	0.88[ASN][1000 genomes]
rs33933929	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34363096	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34432983	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34473775	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34597616	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35285898	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35546703	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35667594	0.83[EUR][1000 genomes]
rs36064019	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3744348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3744349	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs3964723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4325601	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4375688	0.81[ASN][1000 genomes]
rs4410117	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4511574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4516267	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs4794807	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794810	0.83[EUR][1000 genomes]
rs4795355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4795356	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4795358	0.82[CHB][hapmap]
rs4795359	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4795364	0.83[ASN][1000 genomes]
rs55689507	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57399933	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57933226	0.87[ASN][1000 genomes]
rs582088	0.88[ASN][1000 genomes]
rs582176	0.88[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs583980	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs584377	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs585961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs587343	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs587880	0.87[ASN][1000 genomes]
rs588193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs590051	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs593480	0.92[CHB][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs594794	0.88[ASN][1000 genomes]
rs597069	0.87[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs600010	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602282	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs602688	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs612209	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs620686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62074994	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs632202	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs632606	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs634365	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs638201	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs644173	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs649180	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs650106	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6503500	0.88[CHB][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs6503501	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6503502	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6503503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6503504	0.81[CHB][hapmap]
rs6503506	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6503507	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6503513	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[ASN][1000 genomes]
rs651827	0.88[ASN][1000 genomes]
rs665413	0.85[ASN][1000 genomes]
rs667193	0.85[ASN][1000 genomes]
rs667239	0.81[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs676882	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs677888	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs679995	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68178216	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs683948	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7208252	0.82[CHD][hapmap]
rs7208274	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7208487	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs7208714	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7210488	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7212621	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs7215889	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7218074	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7218484	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7218670	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7220650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7221875	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7222252	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap]
rs7223331	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7223438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73293051	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7359658	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7405667	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7501488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7503081	0.83[ASN][1000 genomes]
rs752314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801417	0.84[ASN][1000 genomes]
rs801418	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs801419	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs801420	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs801426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs801427	0.81[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs801429	0.86[ASN][1000 genomes]
rs8065879	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8066704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8067302	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8067948	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8068427	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8069451	0.95[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs8070695	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8072297	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8072351	0.84[ASN][1000 genomes]
rs8073907	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs8076462	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs8076494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8076546	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8077104	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8079303	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8079355	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8079560	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8079590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079662	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081033	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8081220	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8081338	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646419	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs9747342	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9890198	0.88[ASN][1000 genomes]
rs9892055	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9892675	0.87[ASN][1000 genomes]
rs9893735	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs9894500	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9894586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9894864	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9896913	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9898170	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9898773	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9901219	0.86[ASN][1000 genomes]
rs9903363	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9904334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9904919	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9905432	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9905617	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9906612	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs9908131	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs9908760	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9909064	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9913320	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9916302	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9944411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9944459	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
9	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs2168785	PIGW	cis	parietal	SCAN
rs2168785	SLFN14	cis	parietal	SCAN
rs2168785	CCL4	cis	cerebellum	SCAN
rs2168785	PGAP3	cis	cerebellum	SCAN
rs2168785	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs2168785	NEUROD2	cis	parietal	SCAN
rs2168785	PGAP3	cis	Heart Left Ventricle	GTEx
rs2168785	DHRS11	cis	cerebellum	SCAN
rs2168785	RAD51L3	cis	cerebellum	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37395000-37413000	Weak transcription	HSMMtube	muscle
2	chr17:37395000-37414600	Weak transcription	Psoas Muscle	Psoas
3	chr17:37395200-37409000	Weak transcription	Brain Anterior Caudate	brain
4	chr17:37395200-37409200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:37395200-37417000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr17:37396000-37409200	Weak transcription	Pancreas	Pancrea
7	chr17:37396400-37410200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:37396400-37416400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr17:37400800-37410600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr17:37401000-37407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:37401000-37407800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr17:37401000-37408000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:37401000-37408000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:37401000-37408000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr17:37401000-37408200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr17:37401000-37408400	Weak transcription	Fetal Intestine Large	intestine
17	chr17:37401000-37408600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr17:37401000-37409000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr17:37401000-37409000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr17:37401000-37409200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:37401000-37409200	Weak transcription	Brain Hippocampus Middle	brain
22	chr17:37401000-37409200	Weak transcription	Brain Substantia Nigra	brain
23	chr17:37401000-37409200	Weak transcription	Right Ventricle	heart
24	chr17:37401000-37409400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr17:37401000-37413400	Weak transcription	HSMM	muscle
26	chr17:37401000-37414200	Weak transcription	Fetal Brain Male	brain
27	chr17:37401000-37414200	Weak transcription	NHDF-Ad	bronchial
28	chr17:37401000-37426000	Weak transcription	NHLF	lung
29	chr17:37401000-37433000	Weak transcription	Fetal Heart	heart
30	chr17:37401000-37437000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr17:37401200-37408000	Weak transcription	Fetal Lung	lung
32	chr17:37401200-37408200	Weak transcription	Primary T cells from cord blood	blood
33	chr17:37401200-37408200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr17:37401200-37408400	Weak transcription	Fetal Brain Female	brain
35	chr17:37401200-37409000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr17:37401200-37409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr17:37401200-37409000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr17:37401200-37409200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr17:37401200-37409200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr17:37401200-37409200	Weak transcription	Fetal Thymus	thymus
41	chr17:37401200-37409200	Weak transcription	Lung	lung
42	chr17:37401200-37409200	Weak transcription	Ovary	ovary
43	chr17:37401200-37409200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr17:37401200-37409200	Weak transcription	Spleen	Spleen
45	chr17:37401200-37409200	Weak transcription	Dnd41	blood
46	chr17:37401200-37409200	Weak transcription	GM12878-XiMat	blood
47	chr17:37401200-37412800	Weak transcription	Colon Smooth Muscle	Colon
48	chr17:37401200-37414000	Weak transcription	Fetal Kidney	kidney
49	chr17:37401200-37414400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr17:37401400-37407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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