Variant report

Variant	rs4516267
Chromosome Location	chr17:37471482-37471483
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 206 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs10221223	0.85[ASN][1000 genomes]
rs10432030	0.86[ASN][1000 genomes]
rs10432031	0.86[ASN][1000 genomes]
rs10445306	0.87[CHB][hapmap]
rs10491128	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs10491129	0.88[CHB][hapmap];0.90[ASN][1000 genomes]
rs11078893	0.88[CHB][hapmap]
rs11078894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11078895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11078896	0.88[ASN][1000 genomes]
rs11078897	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs11078898	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs11078901	0.88[CHB][hapmap]
rs11078902	0.88[CHB][hapmap]
rs11078906	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs11078907	0.86[CHB][hapmap]
rs11655972	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11657899	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs11869323	0.80[ASN][1000 genomes]
rs11871813	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12150047	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.89[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap]
rs12449852	0.80[ASW][hapmap];0.83[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[TSI][hapmap]
rs12452509	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs12452880	0.88[CHB][hapmap]
rs12600751	0.88[CHB][hapmap]
rs12936996	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs12937013	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12938099	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12947620	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs12950186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13341996	0.88[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs1966915	0.88[ASN][1000 genomes]
rs1966916	0.88[ASN][1000 genomes]
rs1971663	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2024073	0.90[ASN][1000 genomes]
rs2061338	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs2061342	0.87[ASN][1000 genomes]
rs2100651	0.87[ASN][1000 genomes]
rs2168785	0.88[ASN][1000 genomes]
rs2302073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2338755	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs2338795	0.88[ASN][1000 genomes]
rs2338798	0.80[ASN][1000 genomes]
rs2338799	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2338800	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs2338801	0.84[ASN][1000 genomes]
rs28482878	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2879258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2879259	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28799952	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33933929	0.87[ASN][1000 genomes]
rs34473775	0.85[ASN][1000 genomes]
rs3744348	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs3744349	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3964723	0.88[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs4287601	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4325601	0.87[ASN][1000 genomes]
rs4390625	0.85[CHD][hapmap]
rs4511574	0.88[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs4794807	0.80[ASN][1000 genomes]
rs4794808	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4795355	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs4795356	0.88[CHB][hapmap];0.92[CHD][hapmap]
rs4795357	0.88[CHB][hapmap]
rs4795358	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4795369	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs55689507	0.88[ASN][1000 genomes]
rs57933226	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs582088	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs582176	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583980	0.86[ASN][1000 genomes]
rs584377	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs585961	0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs587343	0.90[ASN][1000 genomes]
rs587880	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs588193	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs590051	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs593480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs594794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs600010	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs602282	0.87[ASN][1000 genomes]
rs602688	0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs612209	0.86[ASN][1000 genomes]
rs61368704	0.88[AFR][1000 genomes]
rs620686	0.88[CHB][hapmap];0.90[ASN][1000 genomes]
rs632202	0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs632606	0.87[ASN][1000 genomes]
rs634365	0.82[CHB][hapmap];0.88[CHD][hapmap];0.88[ASN][1000 genomes]
rs638201	0.90[ASN][1000 genomes]
rs644173	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs649180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs650106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6503500	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503502	0.85[ASN][1000 genomes]
rs6503503	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs6503504	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6503506	0.80[ASN][1000 genomes]
rs6503507	0.88[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs6503513	0.85[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap]
rs651827	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665413	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs667193	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs667239	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676882	0.93[ASW][hapmap];0.91[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs677888	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs679995	0.90[ASN][1000 genomes]
rs68178216	0.80[ASN][1000 genomes]
rs683948	0.90[ASN][1000 genomes]
rs7208252	0.87[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs7208274	0.82[ASN][1000 genomes]
rs7208487	0.86[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7208714	0.81[ASN][1000 genomes]
rs7210488	0.81[ASN][1000 genomes]
rs7212621	0.80[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7215983	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7218074	0.81[ASN][1000 genomes]
rs7218484	0.84[ASN][1000 genomes]
rs7218670	0.85[ASN][1000 genomes]
rs7220650	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs7221117	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7221875	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs7222252	0.87[CHB][hapmap];0.92[CHD][hapmap]
rs7223331	0.85[ASN][1000 genomes]
rs7223438	0.88[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs7225096	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs7359658	0.83[ASN][1000 genomes]
rs7501488	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs7503081	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7503705	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs752314	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs755500	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs801417	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs801418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801419	0.90[ASN][1000 genomes]
rs801420	0.90[ASN][1000 genomes]
rs801426	0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs801427	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs801429	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs801430	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8065879	0.80[ASN][1000 genomes]
rs8066704	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs8067302	0.85[ASN][1000 genomes]
rs8067948	0.85[ASN][1000 genomes]
rs8068427	0.80[ASN][1000 genomes]
rs8069451	0.90[CHD][hapmap]
rs8070695	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs8071300	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8072297	0.82[ASN][1000 genomes]
rs8073511	0.87[ASN][1000 genomes]
rs8073907	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8076462	0.88[CHB][hapmap]
rs8076494	0.88[CHB][hapmap];0.92[CHD][hapmap];0.80[ASN][1000 genomes]
rs8076546	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs8077104	0.80[ASN][1000 genomes]
rs8078599	0.92[EUR][1000 genomes]
rs8079303	0.80[ASN][1000 genomes]
rs8079355	0.87[ASN][1000 genomes]
rs8079560	0.85[ASN][1000 genomes]
rs8079590	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs8079662	0.88[ASN][1000 genomes]
rs8081033	0.84[ASN][1000 genomes]
rs8081220	0.90[ASN][1000 genomes]
rs8081338	0.88[ASN][1000 genomes]
rs9646419	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap]
rs9747342	0.90[ASN][1000 genomes]
rs9890198	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891892	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9892055	0.88[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs9893735	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894500	0.80[ASN][1000 genomes]
rs9894586	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs9894864	0.84[ASN][1000 genomes]
rs9896913	0.80[ASN][1000 genomes]
rs9898170	0.82[ASN][1000 genomes]
rs9898773	0.80[ASN][1000 genomes]
rs9899069	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9903363	0.85[ASN][1000 genomes]
rs9904334	0.88[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs9905617	0.85[ASN][1000 genomes]
rs9906612	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9908131	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9908760	0.85[ASN][1000 genomes]
rs9909064	0.85[ASN][1000 genomes]
rs9909304	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9912212	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9912310	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9913320	0.88[ASN][1000 genomes]
rs9916302	0.82[ASN][1000 genomes]
rs9944411	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs9944459	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
9	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
12	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv510709	chr17:37438419-37508395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4516267	RDM1	cis	cerebellum	SCAN
rs4516267	SPACA3	cis	parietal	SCAN
rs4516267	CRKRS	Cis_1M	lymphoblastoid	RTeQTL
rs4516267	CCL4	cis	cerebellum	SCAN
rs4516267	PGAP3	cis	Thyroid	GTEx
rs4516267	SLFN14	cis	parietal	SCAN
rs4516267	GSDMA	cis	parietal	SCAN

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37425000-37473000	Weak transcription	Pancreas	Pancrea
2	chr17:37431400-37473400	Weak transcription	Esophagus	oesophagus
3	chr17:37436000-37496200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr17:37436800-37497800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:37444000-37478400	Weak transcription	Psoas Muscle	Psoas
6	chr17:37453400-37507800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:37454000-37511600	Weak transcription	Hela-S3	cervix
8	chr17:37454600-37473600	Weak transcription	Brain Substantia Nigra	brain
9	chr17:37454800-37471800	Weak transcription	Left Ventricle	heart
10	chr17:37454800-37473800	Weak transcription	Spleen	Spleen
11	chr17:37454800-37474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr17:37455200-37499800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr17:37455400-37477400	Weak transcription	Ovary	ovary
14	chr17:37455400-37485200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:37455400-37495600	Weak transcription	Right Ventricle	heart
16	chr17:37455600-37484800	Weak transcription	Fetal Kidney	kidney
17	chr17:37455800-37495600	Weak transcription	Brain Germinal Matrix	brain
18	chr17:37456200-37499400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr17:37456400-37479800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr17:37457600-37471800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr17:37457600-37497800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr17:37458000-37495000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr17:37458400-37472000	Weak transcription	Placenta	Placenta
24	chr17:37458800-37476200	Weak transcription	Fetal Brain Female	brain
25	chr17:37459400-37472200	Weak transcription	K562	blood
26	chr17:37459400-37474200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr17:37459400-37491000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:37459400-37495600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:37459600-37471800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr17:37459800-37472400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr17:37460200-37471800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr17:37460200-37486800	Weak transcription	Fetal Intestine Large	intestine
33	chr17:37460200-37497600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr17:37460400-37498400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr17:37461000-37474600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr17:37461000-37497400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr17:37461000-37497600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr17:37461200-37471800	Weak transcription	Primary T cells from cord blood	blood
39	chr17:37461200-37472600	Weak transcription	Fetal Thymus	thymus
40	chr17:37461200-37480600	Weak transcription	Liver	Liver
41	chr17:37461200-37481800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr17:37461200-37485000	Weak transcription	HepG2	liver
43	chr17:37461200-37495200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr17:37461200-37495400	Weak transcription	Thymus	Thymus
45	chr17:37461200-37515400	Weak transcription	Lung	lung
46	chr17:37461400-37522000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr17:37461800-37471800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr17:37461800-37485200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr17:37463000-37471800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr17:37463000-37476000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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