Variant report

Variant	rs11659047
Chromosome Location	chr17:17543412-17543413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17399689..17401694-chr17:17543358..17545754,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108551	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11078396	0.85[GIH][hapmap];0.87[TSI][hapmap]
rs11078397	0.85[GIH][hapmap]
rs11651378	1.00[CEU][hapmap]
rs11651957	0.85[EUR][1000 genomes]
rs11653424	0.85[GIH][hapmap]
rs11653696	1.00[GIH][hapmap]
rs11656769	1.00[GIH][hapmap]
rs11658311	1.00[CEU][hapmap]
rs11658944	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs28454257	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28715719	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28884183	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4925112	0.87[TSI][hapmap]
rs56044345	0.91[EUR][1000 genomes]
rs56177028	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56327101	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57638011	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62066215	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62066216	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7210978	1.00[CEU][hapmap]
rs7214988	1.00[CEU][hapmap]
rs7215055	1.00[CEU][hapmap]
rs7217764	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs7219568	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7222358	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7222759	0.89[EUR][1000 genomes]
rs7224725	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs73978990	0.87[EUR][1000 genomes]
rs8064558	1.00[CEU][hapmap]
rs8070432	1.00[CEU][hapmap]
rs8071007	0.87[EUR][1000 genomes]
rs8074981	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8076601	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8077671	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8078513	1.00[CEU][hapmap]
rs897456	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs9889584	1.00[CEU][hapmap]
rs9896285	1.00[CEU][hapmap];0.83[GIH][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9897362	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs9905032	1.00[CEU][hapmap]
rs9905191	1.00[CEU][hapmap]
rs9910075	0.85[GIH][hapmap]
rs9910151	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9910747	1.00[CEU][hapmap]
rs9911823	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9912678	0.92[EUR][1000 genomes]
rs9914118	0.89[EUR][1000 genomes]
rs9944423	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv907751	chr17:17530554-17581184	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17540000-17545000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr17:17541000-17545400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr17:17541200-17545000	Weak transcription	Fetal Stomach	stomach
4	chr17:17541600-17545400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr17:17542400-17544800	Weak transcription	Fetal Lung	lung
6	chr17:17542400-17545000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr17:17543000-17543800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:17543200-17543600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr17:17543200-17543600	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr17:17543400-17543600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr17:17543400-17543600	Enhancers	Spleen	Spleen
12	chr17:17543400-17543800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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