Variant report

Variant	rs9896285
Chromosome Location	chr17:17535847-17535848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17534528..17537339-chr17:17540649..17542204,3	K562	blood:
2	chr17:17493631..17495252-chr17:17535439..17538029,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133027	Chromatin interaction
ENSG00000264666	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11078397	0.83[GIH][hapmap]
rs11651378	1.00[CEU][hapmap]
rs11651957	0.93[EUR][1000 genomes]
rs11653696	0.83[GIH][hapmap]
rs11656769	0.83[GIH][hapmap]
rs11658311	1.00[CEU][hapmap]
rs11658944	1.00[CEU][hapmap]
rs11659047	1.00[CEU][hapmap];0.83[GIH][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28454257	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28583584	0.83[EUR][1000 genomes]
rs28652618	0.83[EUR][1000 genomes]
rs28715719	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28884183	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4925112	0.87[TSI][hapmap]
rs56030759	0.81[EUR][1000 genomes]
rs56044345	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56177028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56327101	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57638011	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62066215	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62066216	0.85[EUR][1000 genomes]
rs7210978	1.00[CEU][hapmap]
rs7214988	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7215055	1.00[CEU][hapmap]
rs7217764	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7219568	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7222358	1.00[CEU][hapmap];0.83[GIH][hapmap];0.88[TSI][hapmap]
rs7222759	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7224725	1.00[CEU][hapmap];0.83[GIH][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs73978990	0.95[EUR][1000 genomes]
rs8064558	1.00[CEU][hapmap]
rs8070432	1.00[CEU][hapmap]
rs8071007	0.95[EUR][1000 genomes]
rs8074981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8076601	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8077671	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8078513	1.00[CEU][hapmap]
rs897456	1.00[CEU][hapmap]
rs9889584	1.00[CEU][hapmap]
rs9897362	1.00[CEU][hapmap];0.83[GIH][hapmap];0.88[TSI][hapmap]
rs9905032	1.00[CEU][hapmap]
rs9905191	1.00[CEU][hapmap]
rs9910151	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9910747	1.00[CEU][hapmap]
rs9911823	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9912678	0.83[EUR][1000 genomes]
rs9914118	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9944423	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv907751	chr17:17530554-17581184	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17528800-17543400	Weak transcription	Spleen	Spleen
2	chr17:17530600-17536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:17532200-17536400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr17:17532200-17536600	Weak transcription	Esophagus	oesophagus
5	chr17:17532400-17536600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:17535200-17536800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr17:17535600-17536000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr17:17535600-17536200	ZNF genes & repeats	Placenta	Placenta

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