Variant report

Variant	rs9912678
Chromosome Location	chr17:17546712-17546713
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11651378	1.00[CEU][hapmap]
rs11651957	0.81[EUR][1000 genomes]
rs11658311	1.00[CEU][hapmap]
rs11658944	1.00[CEU][hapmap]
rs11659047	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs28454257	0.83[EUR][1000 genomes]
rs28715719	0.83[EUR][1000 genomes]
rs28884183	0.83[EUR][1000 genomes]
rs56044345	0.83[EUR][1000 genomes]
rs56177028	0.83[EUR][1000 genomes]
rs56327101	0.83[EUR][1000 genomes]
rs57638011	0.83[EUR][1000 genomes]
rs62066215	0.94[EUR][1000 genomes]
rs62066216	0.94[EUR][1000 genomes]
rs6502612	0.85[AMR][1000 genomes]
rs6502613	0.91[YRI][hapmap]
rs7210978	1.00[CEU][hapmap]
rs7214988	1.00[CEU][hapmap]
rs7217764	1.00[CEU][hapmap]
rs7219568	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7222358	1.00[CEU][hapmap]
rs7222759	0.81[EUR][1000 genomes]
rs7224725	1.00[CEU][hapmap]
rs8064558	1.00[CEU][hapmap]
rs8070432	1.00[CEU][hapmap]
rs8074981	0.83[EUR][1000 genomes]
rs8076601	0.83[EUR][1000 genomes]
rs8077671	0.83[EUR][1000 genomes]
rs897456	1.00[CEU][hapmap]
rs9889584	1.00[CEU][hapmap]
rs9896285	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9897362	1.00[CEU][hapmap]
rs9905032	1.00[CEU][hapmap]
rs9905191	1.00[CEU][hapmap]
rs9910151	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9910747	1.00[CEU][hapmap]
rs9911823	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9914118	0.81[EUR][1000 genomes]
rs9944423	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv907751	chr17:17530554-17581184	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17545200-17547400	Weak transcription	Spleen	Spleen
2	chr17:17545200-17550000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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