Variant report

Variant	rs9914118
Chromosome Location	chr17:17525424-17525425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11651378	1.00[CEU][hapmap]
rs11651957	0.91[EUR][1000 genomes]
rs11658311	1.00[CEU][hapmap]
rs11658944	1.00[CEU][hapmap]
rs11659047	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs28454257	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28583584	0.81[EUR][1000 genomes]
rs28652618	0.81[EUR][1000 genomes]
rs28715719	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28884183	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56044345	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56177028	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56327101	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57638011	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62066215	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62066216	0.83[EUR][1000 genomes]
rs7210978	1.00[CEU][hapmap]
rs7214988	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7217764	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7219568	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7222358	1.00[CEU][hapmap]
rs7222759	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7224725	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs73978990	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8064558	1.00[CEU][hapmap]
rs8070432	1.00[CEU][hapmap]
rs8071007	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8074981	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8076601	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8077671	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs897456	1.00[CEU][hapmap]
rs9889584	1.00[CEU][hapmap]
rs9896285	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9897362	1.00[CEU][hapmap]
rs9905032	1.00[CEU][hapmap]
rs9905191	1.00[CEU][hapmap]
rs9910151	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9910747	1.00[CEU][hapmap]
rs9911823	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9912678	0.81[EUR][1000 genomes]
rs9944423	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17517200-17529400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:17524400-17525800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr17:17524600-17525800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr17:17524800-17525600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr17:17524800-17526200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr17:17525000-17525800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:17525200-17525600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:17525200-17525800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr17:17525200-17525800	Enhancers	Fetal Thymus	thymus
10	chr17:17525200-17527200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr17:17525400-17525600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr17:17525400-17525600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr17:17525400-17527000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr17:17525400-17527000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr17:17525400-17527200	Weak transcription	Spleen	Spleen
16	chr17:17525400-17531800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links