Variant report

Variant	rs11676581
Chromosome Location	chr2:99872861-99872862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr2:99871922-99872870	HL-60	blood:	n/a	n/a
2	POLR2A	chr2:99872220-99872936	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
LYG2	TF binding region

Extended variants
information (count: 133 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1000409	0.81[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10172752	0.85[ASW][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap]
rs10187843	0.92[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs1053544	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs10779902	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11123775	0.86[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs11123777	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11123779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11123782	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11123786	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11683651	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11685870	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11686535	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11687328	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11687870	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs11884686	0.84[JPT][hapmap]
rs11892441	0.84[JPT][hapmap]
rs11892472	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11895206	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11897443	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11899745	0.84[JPT][hapmap]
rs11902994	0.92[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs12464785	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs12615519	0.96[CEU][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12621141	0.83[ASN][1000 genomes]
rs12623540	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13004376	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13007100	0.87[EUR][1000 genomes]
rs13008948	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13009863	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13009884	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13010416	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13011240	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13014360	0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13016182	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13017871	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs13018274	0.92[ASW][hapmap];0.82[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs13019192	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13026997	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13033740	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1451243	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1584647	0.84[JPT][hapmap]
rs1584648	0.84[JPT][hapmap]
rs17022433	0.86[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs17022629	0.84[JPT][hapmap]
rs1825770	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955393	0.88[ASN][1000 genomes]
rs2242037	0.92[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap]
rs2290255	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs2290256	0.92[ASW][hapmap];0.95[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs2290257	0.84[JPT][hapmap]
rs2290261	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs2305354	0.92[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap]
rs2309585	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2309617	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs3087386	0.85[ASW][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap]
rs3749087	0.84[JPT][hapmap]
rs3791212	0.84[JPT][hapmap]
rs3792137	0.89[JPT][hapmap]
rs3792142	0.83[JPT][hapmap]
rs3792146	0.85[ASW][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap]
rs3792149	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs3792152	0.95[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap]
rs3811555	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs3828316	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4535093	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4850899	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4850901	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs4851200	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs4851205	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4851206	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs55867742	0.82[ASN][1000 genomes]
rs55991925	0.86[ASN][1000 genomes]
rs59816625	0.88[ASN][1000 genomes]
rs60294863	0.81[ASN][1000 genomes]
rs6542879	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6542880	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs6708861	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs6709240	0.80[ASN][1000 genomes]
rs6711977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721297	0.95[CHB][hapmap];0.95[YRI][hapmap]
rs6722617	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6732397	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6734290	0.92[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs6735381	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753588	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs717454	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs7421284	0.88[ASN][1000 genomes]
rs7561079	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7561616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7563462	0.84[JPT][hapmap]
rs7567674	0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap]
rs7570978	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7571202	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs7574135	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7579403	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7585721	0.92[ASW][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs7587419	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7593274	0.84[JPT][hapmap]
rs7594838	0.85[ASW][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap]
rs7597141	0.84[JPT][hapmap]
rs7601470	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7601730	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7609108	0.81[ASN][1000 genomes]
rs901596	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv961842	chr2:99781138-99886836	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv515702	chr2:99827733-99922967	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv458685	chr2:99827733-99922967	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv582519	chr2:99827733-99922967	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv874698	chr2:99827733-99924918	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv1001784	chr2:99838079-99910328	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv535840	chr2:99838079-99910328	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv458696	chr2:99838203-99922967	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv582520	chr2:99838203-99922967	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
11	nsv997436	chr2:99840131-99916886	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv1009872	chr2:99840131-99924543	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
13	nsv1001194	chr2:99840131-99928323	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	esv2762746	chr2:99840143-99916898	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
15	nsv1005118	chr2:99841951-99924543	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
16	nsv1001736	chr2:99846306-99916886	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv1009459	chr2:99846306-99918895	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
18	nsv1002169	chr2:99846306-99924543	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
19	esv2751904	chr2:99847882-99913998	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
20	nsv1001235	chr2:99847890-99913998	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
21	nsv582521	chr2:99847890-99922967	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
22	nsv1007566	chr2:99847890-99924543	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
23	nsv999059	chr2:99847890-99926934	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
24	nsv1007249	chr2:99855978-99916886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
25	nsv1004291	chr2:99855978-99919999	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
26	nsv1010419	chr2:99857259-99897312	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
27	nsv1003262	chr2:99858556-99924543	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
28	esv2842	chr2:99871889-99874318	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs11676581	REV1	cis	Thyroid	GTEx
rs11676581	FAHD2A	cis	cerebellum	SCAN
rs11676581	IL1R2	cis	cerebellum	SCAN
rs11676581	LIPT1	cis	cerebellum	SCAN
rs11676581	NEURL3	cis	parietal	SCAN
rs11676581	REV1	Cis_1M	lymphoblastoid	RTeQTL
rs11676581	LIPT1	Cis_1M	lymphoblastoid	RTeQTL
rs11676581	ANKRD23	cis	parietal	SCAN
rs11676581	LIPT1	cis	parietal	SCAN
rs11676581	TSGA10	cis	cerebellum	SCAN
rs11676581	ANKRD36	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99840800-99874400	Weak transcription	Aorta	Aorta
2	chr2:99860400-99899800	Weak transcription	Psoas Muscle	Psoas
3	chr2:99861200-99879200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:99861200-99900800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:99861800-99899400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:99862000-99879200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:99869800-99880000	Weak transcription	Right Ventricle	heart
8	chr2:99872000-99873200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr2:99872000-99873800	Enhancers	HMEC	breast
10	chr2:99872200-99873000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:99872200-99873600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:99872400-99873000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:99872400-99873000	Enhancers	Esophagus	oesophagus
14	chr2:99872400-99873200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:99872400-99873600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:99872600-99873000	Flanking Active TSS	NHEK	skin
17	chr2:99872600-99873200	Enhancers	NH-A	brain
18	chr2:99872800-99873200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:99872800-99873400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links