Variant report

Variant	rs13033740
Chromosome Location	chr2:99900248-99900249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1000409	0.81[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1011633	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs10172068	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10172752	0.85[ASW][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap]
rs10187843	0.92[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs10207981	0.90[JPT][hapmap]
rs1053544	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs10779902	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11123775	0.86[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs11123777	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11123779	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11123782	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11123786	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11674219	0.80[ASN][1000 genomes]
rs11676581	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11683651	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11685870	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11686535	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11687328	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11687870	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs11884686	0.84[JPT][hapmap]
rs11892441	0.84[JPT][hapmap]
rs11892472	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11895206	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11897443	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11899745	0.84[JPT][hapmap]
rs11902994	0.92[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs12464785	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs12615519	0.96[CEU][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs12621141	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12623540	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13004376	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13007100	0.85[EUR][1000 genomes]
rs13008948	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13009863	0.82[AMR][1000 genomes]
rs13009884	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13010416	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13011240	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13014360	0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13016182	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13017871	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13018274	0.92[ASW][hapmap];0.82[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs13019192	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13026997	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1451243	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1584647	0.84[JPT][hapmap]
rs1584648	0.84[JPT][hapmap]
rs17022433	0.86[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs17022629	0.84[JPT][hapmap]
rs1825770	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1955393	0.88[ASN][1000 genomes]
rs2141908	0.81[AMR][1000 genomes]
rs2242037	0.92[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap]
rs2290255	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs2290256	0.92[ASW][hapmap];0.95[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs2290257	0.84[JPT][hapmap]
rs2290261	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs2305354	0.92[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap]
rs2309585	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2309617	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs3087386	0.85[ASW][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap]
rs3749087	0.84[JPT][hapmap]
rs3791212	0.84[JPT][hapmap]
rs3792134	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs3792137	0.89[JPT][hapmap]
rs3792142	0.83[JPT][hapmap]
rs3792146	0.85[ASW][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap]
rs3792149	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs3792152	0.95[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap]
rs3811555	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs3828316	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4535093	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4850899	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4850901	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs4851200	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs4851205	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4851206	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs55867742	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs55991925	0.86[ASN][1000 genomes]
rs59816625	0.88[ASN][1000 genomes]
rs60294863	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6542879	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6542880	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs6542882	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6708861	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs6709240	0.81[ASN][1000 genomes]
rs6711977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6721297	0.95[CHB][hapmap];0.95[YRI][hapmap]
rs6722617	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6732397	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6734290	0.92[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs6735381	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6753588	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71413827	0.82[AFR][1000 genomes]
rs717454	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs7421284	0.87[ASN][1000 genomes]
rs7561079	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7561616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563462	0.84[JPT][hapmap]
rs7567674	0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap]
rs7570978	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7571202	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs7574135	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7579403	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7580448	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7585019	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs7585721	0.92[ASW][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs7587419	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7593274	0.84[JPT][hapmap]
rs7594838	0.85[ASW][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap]
rs7597141	0.84[JPT][hapmap]
rs7601470	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7601730	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7609108	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs769105	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs896248	0.82[JPT][hapmap]
rs896249	0.84[JPT][hapmap]
rs901596	0.88[ASN][1000 genomes]
rs959929	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv515702	chr2:99827733-99922967	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
3	nsv458685	chr2:99827733-99922967	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv582519	chr2:99827733-99922967	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv874698	chr2:99827733-99924918	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv1001784	chr2:99838079-99910328	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv535840	chr2:99838079-99910328	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv458696	chr2:99838203-99922967	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
9	nsv582520	chr2:99838203-99922967	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv997436	chr2:99840131-99916886	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv1009872	chr2:99840131-99924543	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
12	nsv1001194	chr2:99840131-99928323	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
13	esv2762746	chr2:99840143-99916898	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	nsv1005118	chr2:99841951-99924543	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
15	nsv1001736	chr2:99846306-99916886	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	nsv1009459	chr2:99846306-99918895	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
17	nsv1002169	chr2:99846306-99924543	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
18	esv2751904	chr2:99847882-99913998	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
19	nsv1001235	chr2:99847890-99913998	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
20	nsv582521	chr2:99847890-99922967	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
21	nsv1007566	chr2:99847890-99924543	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
22	nsv999059	chr2:99847890-99926934	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
23	nsv1007249	chr2:99855978-99916886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
24	nsv1004291	chr2:99855978-99919999	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
25	nsv1003262	chr2:99858556-99924543	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
26	nsv874699	chr2:99898998-100010044	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs13033740	REV1	cis	Thyroid	GTEx
rs13033740	TSGA10	cis	cerebellum	SCAN
rs13033740	ANKRD23	cis	parietal	SCAN
rs13033740	LIPT1	cis	cerebellum	SCAN
rs13033740	LIPT1	cis	parietal	SCAN
rs13033740	IL1R2	cis	cerebellum	SCAN
rs13033740	REV1	Cis_1M	lymphoblastoid	RTeQTL
rs13033740	FAHD2A	cis	cerebellum	SCAN
rs13033740	ANKRD36	cis	parietal	SCAN
rs13033740	LIPT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99861200-99900800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:99873800-99900600	Weak transcription	Ovary	ovary
3	chr2:99879000-99933600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:99880400-99907400	Weak transcription	Right Ventricle	heart
5	chr2:99889000-99906000	Weak transcription	Aorta	Aorta
6	chr2:99892400-99900600	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:99892400-99918600	Weak transcription	Brain Anterior Caudate	brain
8	chr2:99892400-99935000	Weak transcription	Brain Angular Gyrus	brain
9	chr2:99892800-99900800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:99894000-99902400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr2:99894200-99934800	Weak transcription	Gastric	stomach
12	chr2:99894600-99900800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:99895400-99935000	Weak transcription	Pancreas	Pancrea
14	chr2:99895600-99900800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr2:99895600-99901200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr2:99895800-99900800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:99895800-99900800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr2:99895800-99914400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:99895800-99921000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:99895800-99933600	Weak transcription	HSMM	muscle
21	chr2:99895800-99933600	Weak transcription	HSMMtube	muscle
22	chr2:99896800-99900800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:99896800-99933400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:99897000-99907200	Weak transcription	A549	lung
25	chr2:99897000-99918400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr2:99897000-99933600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:99897200-99914600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:99897200-99918400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:99897200-99933800	Weak transcription	Fetal Intestine Small	intestine
30	chr2:99897400-99900600	Weak transcription	Thymus	Thymus
31	chr2:99897400-99933800	Weak transcription	HepG2	liver
32	chr2:99897600-99902600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:99897600-99918800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr2:99897800-99907400	Weak transcription	Adipose Nuclei	Adipose
35	chr2:99898200-99918800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:99898200-99934000	Weak transcription	Small Intestine	intestine
37	chr2:99898400-99938600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr2:99898600-99900800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr2:99898600-99901000	Weak transcription	Fetal Stomach	stomach
40	chr2:99898600-99933800	Weak transcription	Colon Smooth Muscle	Colon
41	chr2:99898800-99900400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr2:99899200-99900800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr2:99899200-99900800	Weak transcription	Brain Substantia Nigra	brain
44	chr2:99899200-99918400	Weak transcription	Spleen	Spleen
45	chr2:99899400-99902200	Strong transcription	Left Ventricle	heart
46	chr2:99899400-99902200	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr2:99899400-99902200	Weak transcription	GM12878-XiMat	blood
48	chr2:99899400-99902400	Strong transcription	Primary T cells from cord blood	blood
49	chr2:99899400-99918600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:99899400-99933800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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