Variant report

Variant	rs11677468
Chromosome Location	chr2:33839053-33839054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11695597	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375194	0.82[ASN][1000 genomes]
rs1448560	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1448561	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1448562	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545399	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17658224	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1839158	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35866672	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670818	0.85[ASN][1000 genomes]
rs4670820	0.81[ASN][1000 genomes]
rs59809293	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6543723	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6748623	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11677468	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
3	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
4	chr2:33836800-33839600	Enhancers	Ovary	ovary
5	chr2:33837200-33843800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:33837400-33839800	Enhancers	Placenta	Placenta
7	chr2:33837600-33840800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:33838000-33840200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:33838200-33839800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:33838200-33839800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:33838200-33839800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:33838200-33839800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:33838400-33839600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr2:33838400-33839800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:33838600-33844000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:33839000-33839800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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