Variant report

Variant	rs35866672
Chromosome Location	chr2:33842174-33842175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11677468	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11683557	0.83[AFR][1000 genomes]
rs11695597	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375194	0.82[ASN][1000 genomes]
rs1448560	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1448561	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1448562	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545399	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17658224	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1839158	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670818	0.85[ASN][1000 genomes]
rs4670820	0.81[ASN][1000 genomes]
rs59809293	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6543723	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6748623	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35866672	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
3	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
4	chr2:33837200-33843800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:33838600-33844000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:33840000-33842800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:33840200-33843200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr2:33840800-33842200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr2:33840800-33844400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr2:33840800-33844800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr2:33841200-33843200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:33841600-33842400	Enhancers	GM12878-XiMat	blood
13	chr2:33841800-33845000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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