Variant report

Variant	rs6748623
Chromosome Location	chr2:33831018-33831019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33830666..33833557-chr2:33837571..33839781,2	K562	blood:
2	chr2:33822942..33826673-chr2:33827306..33831719,4	MCF-7	breast:
3	chr2:33829331..33831606-chr2:33844962..33847782,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

rs_ID	r²[population]
rs11677468	0.86[ASN][1000 genomes]
rs11695597	0.86[ASN][1000 genomes]
rs1448560	0.85[ASN][1000 genomes]
rs1448561	0.85[ASN][1000 genomes]
rs1448562	0.86[ASN][1000 genomes]
rs1545399	0.85[ASN][1000 genomes]
rs17658224	0.86[ASN][1000 genomes]
rs1839158	0.86[ASN][1000 genomes]
rs35866672	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59809293	0.86[ASN][1000 genomes]
rs6543723	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs6748623	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33831200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:33825200-33832200	Weak transcription	Fetal Heart	heart
3	chr2:33825200-33832200	Weak transcription	Psoas Muscle	Psoas
4	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:33825400-33833000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:33827400-33832200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:33828000-33832000	Weak transcription	Ovary	ovary
9	chr2:33828600-33831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:33829200-33832200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:33829200-33833000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:33830000-33831600	Enhancers	Fetal Kidney	kidney
13	chr2:33830400-33833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:33830400-33833200	Weak transcription	Left Ventricle	heart
15	chr2:33830400-33834800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:33830600-33832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:33830600-33832000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:33830600-33832800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:33830600-33832800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:33830800-33831600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:33830800-33832000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr2:33830800-33832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr2:33830800-33832000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:33830800-33832000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:33830800-33832200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:33830800-33832600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:33830800-33832600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr2:33831000-33832200	Weak transcription	Placenta	Placenta

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