Variant report

Variant	rs1545399
Chromosome Location	chr2:33843801-33843802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11677468	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11695597	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1375194	0.85[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs1448560	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1448561	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1448562	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17658224	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1839158	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35866672	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670818	0.85[ASN][1000 genomes]
rs4670820	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs59809293	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6543723	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6748623	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1545399	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
3	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
4	chr2:33838600-33844000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:33840800-33844400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr2:33840800-33844800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr2:33841800-33845000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr2:33842200-33844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:33843200-33845200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:33843400-33845800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr2:33843800-33845600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links