Variant report

Variant	rs11691524
Chromosome Location	chr2:141164151-141164152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10460268	0.91[CHB][hapmap]
rs10496841	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11674722	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12233220	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1474102	0.95[CHB][hapmap]
rs16843644	0.95[CHB][hapmap]
rs16843680	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs16843732	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs16843812	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs16843825	0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16843911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856005	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3748864	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs3748865	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs3887578	0.95[CHB][hapmap]
rs73964214	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv459507	chr2:141130097-141170340	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583190	chr2:141130097-141170340	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv470488	chr2:141133405-141170339	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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