Variant report

Variant	rs3748865
Chromosome Location	chr2:141027926-141027927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10460268	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs10496841	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap]
rs11674722	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11691524	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs12233220	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1474102	0.86[CHB][hapmap]
rs16843644	0.95[CHB][hapmap];0.81[CHD][hapmap];0.94[MEX][hapmap]
rs16843680	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16843732	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap]
rs16843812	0.86[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap]
rs16843825	0.85[JPT][hapmap]
rs16843911	0.91[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.93[MKK][hapmap]
rs16856005	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3748864	0.93[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs3887578	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141027000-141028000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:141027400-141028600	Enhancers	HUVEC	blood vessel
3	chr2:141027600-141028000	Enhancers	Brain Cingulate Gyrus	brain
4	chr2:141027600-141028000	Active TSS	Brain Hippocampus Middle	brain
5	chr2:141027800-141028000	Enhancers	Brain Angular Gyrus	brain
6	chr2:141027800-141028000	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links