Variant report

Variant	rs3748864
Chromosome Location	chr2:140997197-140997198
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1008695	0.83[EUR][1000 genomes]
rs10173775	0.83[EUR][1000 genomes]
rs10184771	0.83[EUR][1000 genomes]
rs10460268	0.86[CHB][hapmap]
rs10496841	0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.80[MKK][hapmap];0.89[TSI][hapmap]
rs11674722	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11691524	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12233220	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1474102	0.91[CHB][hapmap]
rs16843644	1.00[CHB][hapmap];0.97[CHD][hapmap]
rs16843680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16843732	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap]
rs16843812	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap]
rs16843825	0.86[JPT][hapmap]
rs16843911	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[MKK][hapmap]
rs16856005	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs3748865	0.93[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3887578	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875180	chr2:140735843-141004529	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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