Variant report
| Variant | rs3887578 |
|---|---|
| Chromosome Location | chr2:140982342-140982343 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MYC | chr2:140982321-140982466 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MTND1P27 | TF binding region |
| MTND2P19 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10460268 | 0.86[CHB][hapmap] |
| rs10496841 | 0.90[CHB][hapmap] |
| rs11674722 | 1.00[CHB][hapmap] |
| rs11691524 | 0.95[CHB][hapmap] |
| rs12233220 | 0.95[CHB][hapmap] |
| rs1474102 | 0.91[CHB][hapmap] |
| rs16843644 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16843680 | 1.00[CHB][hapmap] |
| rs16843732 | 1.00[CHB][hapmap] |
| rs16843812 | 0.91[CHB][hapmap] |
| rs16843911 | 0.95[CHB][hapmap] |
| rs16856005 | 0.87[CHB][hapmap] |
| rs3748864 | 1.00[CHB][hapmap] |
| rs3748865 | 0.95[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875180 | chr2:140735843-141004529 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv583188 | chr2:140891843-140982918 | Enhancers Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv834392 | chr2:140920900-141086613 | Flanking Active TSS Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv431757 | chr2:140931289-141098020 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 5 | esv2754491 | chr2:140947477-141026986 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | n/a |
| 6 | nsv979131 | chr2:140974668-140982713 | Inactive region | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
