Variant report

Variant	rs1008695
Chromosome Location	chr2:140968308-140968309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10173775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10184771	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10460268	0.82[CHB][hapmap]
rs10496841	0.85[CHB][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap]
rs11674722	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11691524	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs12233220	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1474102	0.86[CHB][hapmap]
rs16843464	0.92[ASN][1000 genomes]
rs16843644	0.95[CHB][hapmap];0.94[CHD][hapmap]
rs16843680	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16843732	0.93[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs16843812	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs16843825	0.86[JPT][hapmap]
rs16843911	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs16856005	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs3748864	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3748865	0.93[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs3887578	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875180	chr2:140735843-141004529	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv583188	chr2:140891843-140982918	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:140968200-140968600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:140968200-140968600	Enhancers	Fetal Kidney	kidney
3	chr2:140968200-140969200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:140968200-140969600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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