Variant report
Variant | rs11697437 |
---|---|
Chromosome Location | chr20:24034852-24034853 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11696175 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11696314 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11700231 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2145968 | 1.00[EUR][1000 genomes] |
rs59581206 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6106771 | 1.00[EUR][1000 genomes] |
rs6106773 | 1.00[EUR][1000 genomes] |
rs6106774 | 1.00[EUR][1000 genomes] |
rs6114433 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6114438 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6114439 | 1.00[EUR][1000 genomes] |
rs6114440 | 1.00[EUR][1000 genomes] |
rs6114441 | 1.00[EUR][1000 genomes] |
rs6114442 | 1.00[EUR][1000 genomes] |
rs6114445 | 1.00[EUR][1000 genomes] |
rs6114447 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7262403 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7262446 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7262457 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1063474 | chr20:23918394-24048069 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
3 | nsv1056491 | chr20:23955040-24105080 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:24033800-24041600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |