Variant report

Variant	rs7262446
Chromosome Location	chr20:24033153-24033154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11696175	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11696314	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11697437	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11700231	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2145968	1.00[EUR][1000 genomes]
rs59581206	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106771	1.00[EUR][1000 genomes]
rs6106773	1.00[EUR][1000 genomes]
rs6106774	1.00[EUR][1000 genomes]
rs6114433	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114439	1.00[EUR][1000 genomes]
rs6114440	1.00[EUR][1000 genomes]
rs6114441	1.00[EUR][1000 genomes]
rs6114442	1.00[EUR][1000 genomes]
rs6114445	1.00[EUR][1000 genomes]
rs6114447	1.00[EUR][1000 genomes]
rs7262403	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7262457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24017600-24033600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24026800-24034200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr20:24029200-24034200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr20:24030000-24034000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr20:24030200-24034000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr20:24030400-24033200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr20:24032600-24034200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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