Variant report
| Variant | rs6114439 |
|---|---|
| Chromosome Location | chr20:24034758-24034759 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1040885 | 0.83[AFR][1000 genomes] |
| rs11696175 | 1.00[EUR][1000 genomes] |
| rs11696314 | 1.00[EUR][1000 genomes] |
| rs11697437 | 1.00[EUR][1000 genomes] |
| rs11700231 | 1.00[EUR][1000 genomes] |
| rs2145968 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59581206 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6106771 | 1.00[EUR][1000 genomes] |
| rs6106773 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6106774 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6114433 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6114438 | 1.00[EUR][1000 genomes] |
| rs6114440 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6114441 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6114442 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6114445 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6114447 | 1.00[EUR][1000 genomes] |
| rs7262403 | 1.00[EUR][1000 genomes] |
| rs7262446 | 1.00[EUR][1000 genomes] |
| rs7262457 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063474 | chr20:23918394-24048069 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv1056491 | chr20:23955040-24105080 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24033800-24041600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
