Variant report

Variant	rs6114433
Chromosome Location	chr20:24028422-24028423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11696175	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11696314	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11697437	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11700231	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2145968	1.00[EUR][1000 genomes]
rs59581206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106771	1.00[EUR][1000 genomes]
rs6106773	1.00[EUR][1000 genomes]
rs6106774	1.00[EUR][1000 genomes]
rs6114438	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114439	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6114440	1.00[EUR][1000 genomes]
rs6114441	1.00[EUR][1000 genomes]
rs6114442	1.00[EUR][1000 genomes]
rs6114445	1.00[EUR][1000 genomes]
rs6114447	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7262403	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7262446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7262457	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24017600-24033600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24026800-24030800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr20:24026800-24032200	Weak transcription	Fetal Thymus	thymus
4	chr20:24026800-24034200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr20:24027000-24029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr20:24027000-24030400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr20:24027800-24029000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:24027800-24029200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr20:24027800-24030200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr20:24028000-24029200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr20:24028000-24030000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr20:24028000-24030400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr20:24028000-24030600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr20:24028000-24032200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr20:24028200-24028600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr20:24028200-24029200	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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