Variant report

Variant	rs1169964
Chromosome Location	chr12:121786968-121786969
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:121786942-121786992	HAEpiC	amniotic membrane:	n/a
2	chr12:121786942-121786992	HRPEpiC	eye:	n/a
3	chr12:121786942-121786992	PrEC	prostate:	n/a
4	chr12:121786942-121786992	SK-N-SH_RA	brain:	n/a
5	chr12:121786942-121786992	PANC-1	pancreas:	n/a
6	chr12:121786942-121786992	NHBE	bronchial:	n/a
7	chr12:121786942-121786992	Hepatocyte	liver:	n/a
8	chr12:121786942-121786992	GM06990	blood:	n/a
9	chr12:121786942-121786992	Jurkat	blood:	n/a
10	chr12:121786942-121786992	NT2-D1	testis:	n/a
11	chr12:121786942-121786992	HEEpiC	esophagus:	n/a
12	chr12:121786942-121786992	ECC-1	luminal epithelium:	n/a
13	chr12:121786942-121786992	HCPEpiC	choroid plexus:	n/a
14	chr12:121786942-121786992	NB4	blood:	n/a
15	chr12:121786942-121786992	A549	lung:	n/a
16	chr12:121786942-121786992	GM19239	blood:	n/a
17	chr12:121786942-121786992	HRCEpiC	kidney:	n/a
18	chr12:121786942-121786992	HL-60	blood:	n/a
19	chr12:121786942-121786992	HRE	kidney:	n/a
20	chr12:121786942-121786992	U87	brain:	n/a
21	chr12:121786942-121786992	HCM	heart:	n/a
22	chr12:121786942-121786992	GM12892	blood:	n/a
23	chr12:121786942-121786992	HCT-116	colon:	n/a
24	chr12:121786942-121786992	Caco-2	colon:	n/a
25	chr12:121786942-121786992	AG09319	gingival:	n/a
26	chr12:121786942-121786992	MCF10A-Er-Src	breast:	n/a
27	chr12:121786942-121786992	ovcar-3	ovarian:	n/a
28	chr12:121786942-121786992	HNPCEpiC	eye:	n/a
29	chr12:121786942-121786992	GM12878	blood:	n/a
30	chr12:121786942-121786992	CMK	blood:	n/a
31	chr12:121786942-121786992	SAEC	small airway:	n/a
32	chr12:121786942-121786992	AG10803	skin:	n/a
33	chr12:121786942-121786992	NH-A	brain:	n/a
34	chr12:121786942-121786992	K562	blood:	n/a
35	chr12:121786942-121786992	AG04450	lung:	fetal
36	chr12:121786942-121786992	SKMC	muscle:	n/a
37	chr12:121786942-121786992	ProgFib	skin:	n/a
38	chr12:121786942-121786992	IMR90	lung:	fetal
39	chr12:121786942-121786992	MCF-7	breast:	n/a
40	chr12:121786942-121786992	PFSK-1	brain:	n/a
41	chr12:121786942-121786992	HEK293	kidney:	embryo
42	chr12:121786942-121786992	GM12891	blood:	n/a
43	chr12:121786942-121786992	AG04449	skin:	fetal
44	chr12:121786942-121786992	T-47D	breast:	n/a
45	chr12:121786942-121786992	HMEC	breast:	n/a
46	chr12:121786942-121786992	LNCaP	prostate:	n/a
47	chr12:121786942-121786992	BE2_C	brain:	n/a
48	chr12:121786942-121786992	AoSMC	blood vessel:	n/a
49	chr12:121786942-121786992	BJ	skin:	n/a
50	chr12:121786942-121786992	AG09309	skin:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121786049..121792349-chr12:121835999..121841368,18	K562	blood:
2	chr12:121784938..121792349-chr12:121835915..121842265,20	K562	blood:
3	chr12:121772223..121776084-chr12:121786669..121790382,4	MCF-7	breast:
4	chr12:121785517..121787632-chr12:121788366..121790709,4	MCF-7	breast:
5	chr12:121785461..121788491-chr12:121789239..121792486,3	K562	blood:

No data

Variant related genes	Relation type
ANAPC5	CpG island
ENSG00000170633	Chromatin interaction
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11065522	0.83[CHB][hapmap]
rs11065527	0.82[ASN][1000 genomes]
rs1169963	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12303740	0.88[ASN][1000 genomes]
rs1617736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2668261	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2668262	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2911705	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2942069	0.93[ASN][1000 genomes]
rs2942076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950425	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2950426	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6489806	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7398507	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121752000-121787000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121768000-121787000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:121769000-121788800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:121772600-121789400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:121775600-121789000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:121776800-121788600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:121777400-121787000	Strong transcription	K562	blood
8	chr12:121781600-121788800	Weak transcription	Right Atrium	heart
9	chr12:121782200-121789000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:121783200-121788600	Weak transcription	Fetal Heart	heart
11	chr12:121783600-121788400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:121783600-121789200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:121783800-121788400	Weak transcription	Small Intestine	intestine
14	chr12:121784000-121788600	Weak transcription	Brain Anterior Caudate	brain
15	chr12:121784000-121788800	Weak transcription	Psoas Muscle	Psoas
16	chr12:121784000-121788800	Weak transcription	HSMMtube	muscle
17	chr12:121784000-121789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:121784000-121789000	Weak transcription	Gastric	stomach
19	chr12:121784000-121789400	Weak transcription	Aorta	Aorta
20	chr12:121784200-121788200	Weak transcription	Spleen	Spleen
21	chr12:121784200-121788400	Weak transcription	Lung	lung
22	chr12:121784200-121788600	Weak transcription	NHDF-Ad	bronchial
23	chr12:121784200-121789000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr12:121784200-121789000	Weak transcription	Esophagus	oesophagus
25	chr12:121784200-121789200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr12:121784400-121788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr12:121784400-121788800	Weak transcription	Left Ventricle	heart
28	chr12:121784400-121789000	Weak transcription	Brain Germinal Matrix	brain
29	chr12:121784400-121789000	Weak transcription	Colonic Mucosa	Colon
30	chr12:121784400-121789400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:121784600-121788000	Weak transcription	Fetal Brain Male	brain
32	chr12:121784600-121788600	Weak transcription	Fetal Kidney	kidney
33	chr12:121784600-121789000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr12:121784800-121787800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr12:121784800-121787800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr12:121784800-121788000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:121784800-121788400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr12:121784800-121788400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr12:121784800-121788400	Weak transcription	A549	lung
40	chr12:121784800-121788600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr12:121784800-121788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr12:121784800-121788600	Weak transcription	Stomach Mucosa	stomach
43	chr12:121784800-121788600	Weak transcription	NH-A	brain
44	chr12:121784800-121788800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr12:121784800-121788800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr12:121784800-121788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr12:121784800-121788800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr12:121784800-121788800	Weak transcription	Fetal Intestine Small	intestine
49	chr12:121784800-121788800	Weak transcription	Fetal Lung	lung
50	chr12:121785000-121787600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links