Variant report

Variant	rs1617736
Chromosome Location	chr12:121792092-121792093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr12:121791868-121792188	HepG2	liver:	n/a	n/a
2	HDAC2	chr12:121791874-121792123	HepG2	liver:	n/a	n/a
3	FOXA2	chr12:121791865-121792158	HepG2	liver:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121786049..121792349-chr12:121835999..121841368,18	K562	blood:
2	chr12:121735322..121737051-chr12:121790415..121793182,3	MCF-7	breast:
3	chr12:121766130..121768348-chr12:121790884..121792493,2	MCF-7	breast:
4	chr12:121778180..121780976-chr12:121790282..121792378,2	K562	blood:
5	chr12:121785461..121788491-chr12:121789239..121792486,3	K562	blood:
6	chr12:121784938..121792349-chr12:121835915..121842265,20	K562	blood:
7	chr12:121789890..121792277-chr12:121828358..121830273,2	K562	blood:
8	chr12:121788511..121790384-chr12:121791177..121794570,4	K562	blood:
9	chr12:121788188..121792674-chr12:121835209..121840455,13	MCF-7	breast:
10	chr12:121788153..121793367-chr12:121835114..121840699,18	MCF-7	breast:
11	chr12:121746148..121747954-chr12:121790384..121792128,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ANAPC5	TF binding region
ENSG00000170633	Chromatin interaction
ENSG00000258435	Chromatin interaction
ENSG00000089053	Chromatin interaction
ENSG00000110931	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10774591	0.80[GIH][hapmap]
rs11065522	0.84[CHB][hapmap]
rs1169963	0.94[GIH][hapmap]
rs1169964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12303740	0.86[ASN][1000 genomes]
rs2089886	0.80[GIH][hapmap]
rs2668261	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28405771	1.00[CEU][hapmap]
rs2911705	0.91[ASN][1000 genomes]
rs2942069	0.90[ASN][1000 genomes]
rs2942076	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2950425	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2950426	0.89[ASN][1000 genomes]
rs4980993	0.80[GIH][hapmap]
rs6489806	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7398507	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121791000-121795800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:121791200-121795600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr12:121791200-121795800	Weak transcription	Liver	Liver
4	chr12:121791200-121795800	Weak transcription	Fetal Intestine Small	intestine
5	chr12:121791200-121796000	Weak transcription	A549	lung
6	chr12:121792000-121792200	Flanking Active TSS	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links