Variant report

Variant	rs1169963
Chromosome Location	chr12:121786783-121786784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121786049..121792349-chr12:121835999..121841368,18	K562	blood:
2	chr12:121784938..121792349-chr12:121835915..121842265,20	K562	blood:
3	chr12:121772223..121776084-chr12:121786669..121790382,4	MCF-7	breast:
4	chr12:121785517..121787632-chr12:121788366..121790709,4	MCF-7	breast:
5	chr12:121785461..121788491-chr12:121789239..121792486,3	K562	blood:

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction
ENSG00000170633	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11065536	0.86[ASN][1000 genomes]
rs1169961	0.90[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1169962	0.86[ASN][1000 genomes]
rs1169964	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1617736	0.94[GIH][hapmap]
rs1622534	0.91[ASN][1000 genomes]
rs1624953	0.88[ASN][1000 genomes]
rs1647253	0.83[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs1647256	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1706463	0.90[ASN][1000 genomes]
rs1799525	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1799526	0.91[ASN][1000 genomes]
rs2668259	0.90[ASN][1000 genomes]
rs2668260	0.89[ASN][1000 genomes]
rs2668261	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2668262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695142	0.91[ASN][1000 genomes]
rs2695148	0.82[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs2695149	0.87[ASN][1000 genomes]
rs2942074	0.82[ASN][1000 genomes]
rs2942076	1.00[CEU][hapmap];0.94[GIH][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs2950417	0.92[ASN][1000 genomes]
rs2950425	0.82[EUR][1000 genomes]
rs7397643	0.86[ASN][1000 genomes]
rs7398701	0.91[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121752000-121787000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121768000-121787000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:121769000-121788800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:121772600-121789400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:121775600-121789000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:121776800-121788600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:121777400-121787000	Strong transcription	K562	blood
8	chr12:121781600-121788800	Weak transcription	Right Atrium	heart
9	chr12:121782200-121789000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:121783200-121788600	Weak transcription	Fetal Heart	heart
11	chr12:121783600-121788400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:121783600-121789200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:121783800-121788400	Weak transcription	Small Intestine	intestine
14	chr12:121784000-121788600	Weak transcription	Brain Anterior Caudate	brain
15	chr12:121784000-121788800	Weak transcription	Psoas Muscle	Psoas
16	chr12:121784000-121788800	Weak transcription	HSMMtube	muscle
17	chr12:121784000-121789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:121784000-121789000	Weak transcription	Gastric	stomach
19	chr12:121784000-121789400	Weak transcription	Aorta	Aorta
20	chr12:121784200-121786800	Weak transcription	Pancreas	Pancrea
21	chr12:121784200-121788200	Weak transcription	Spleen	Spleen
22	chr12:121784200-121788400	Weak transcription	Lung	lung
23	chr12:121784200-121788600	Weak transcription	NHDF-Ad	bronchial
24	chr12:121784200-121789000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr12:121784200-121789000	Weak transcription	Esophagus	oesophagus
26	chr12:121784200-121789200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr12:121784400-121786800	Weak transcription	Right Ventricle	heart
28	chr12:121784400-121788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr12:121784400-121788800	Weak transcription	Left Ventricle	heart
30	chr12:121784400-121789000	Weak transcription	Brain Germinal Matrix	brain
31	chr12:121784400-121789000	Weak transcription	Colonic Mucosa	Colon
32	chr12:121784400-121789400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:121784600-121788000	Weak transcription	Fetal Brain Male	brain
34	chr12:121784600-121788600	Weak transcription	Fetal Kidney	kidney
35	chr12:121784600-121789000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr12:121784800-121786800	Weak transcription	Fetal Stomach	stomach
37	chr12:121784800-121787800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr12:121784800-121787800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr12:121784800-121788000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr12:121784800-121788400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:121784800-121788400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr12:121784800-121788400	Weak transcription	A549	lung
43	chr12:121784800-121788600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr12:121784800-121788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr12:121784800-121788600	Weak transcription	Stomach Mucosa	stomach
46	chr12:121784800-121788600	Weak transcription	NH-A	brain
47	chr12:121784800-121788800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr12:121784800-121788800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr12:121784800-121788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr12:121784800-121788800	Weak transcription	Brain Inferior Temporal Lobe	brain

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