Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121792535..121794507-chr12:121806611..121808238,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11065536	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1169961	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1169962	0.93[ASN][1000 genomes]
rs1169963	0.86[ASN][1000 genomes]
rs1622534	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1624953	0.88[ASN][1000 genomes]
rs1647253	0.93[ASN][1000 genomes]
rs1647256	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1706463	0.83[ASN][1000 genomes]
rs1799525	0.92[ASN][1000 genomes]
rs1799526	0.92[ASN][1000 genomes]
rs2668259	0.95[ASN][1000 genomes]
rs2668260	0.90[ASN][1000 genomes]
rs2668262	0.86[ASN][1000 genomes]
rs2695142	0.81[ASN][1000 genomes]
rs2695148	0.93[ASN][1000 genomes]
rs2695149	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2942074	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2950417	0.91[ASN][1000 genomes]
rs7398701	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7397643	ANAPC5	cis	Muscle Skeletal	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121804000-121807200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:121806400-121808200	Enhancers	Skeletal Muscle Male	skeletal muscle

Quick Search: