Variant report

Variant	rs2942074
Chromosome Location	chr12:121807430-121807431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11065536	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1169961	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1169962	0.91[ASN][1000 genomes]
rs1169963	0.82[ASN][1000 genomes]
rs1622534	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1624953	0.90[ASN][1000 genomes]
rs1647253	0.88[ASN][1000 genomes]
rs1647256	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1706463	0.82[ASN][1000 genomes]
rs1799525	0.93[ASN][1000 genomes]
rs1799526	0.90[ASN][1000 genomes]
rs2668259	0.90[ASN][1000 genomes]
rs2668260	0.85[ASN][1000 genomes]
rs2668262	0.82[ASN][1000 genomes]
rs2695148	0.88[ASN][1000 genomes]
rs2695149	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2950417	0.86[ASN][1000 genomes]
rs7397643	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7398701	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2942074	ANAPC5	cis	Muscle Skeletal	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121806400-121808200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr12:121807200-121808000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr12:121807200-121808200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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