Variant report

Variant	rs11716132
Chromosome Location	chr3:28481222-28481223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10510610	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12106746	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12107561	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12374021	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12485652	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12491905	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493720	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493797	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068978	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13089663	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090951	0.82[EUR][1000 genomes]
rs13095609	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1588669	0.88[ASN][1000 genomes]
rs1599951	0.88[ASN][1000 genomes]
rs17639954	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1870258	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2125205	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34335277	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34400037	0.88[ASN][1000 genomes]
rs34539152	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34637008	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35194037	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35374336	0.83[EUR][1000 genomes]
rs36106945	0.84[EUR][1000 genomes]
rs4393865	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4680912	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058287	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251110	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62251112	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62251132	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6551254	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763250	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6799435	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6803915	0.88[ASN][1000 genomes]
rs7629714	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9968098	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv876650	chr3:28427029-28613602	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv979813	chr3:28478897-28489553	Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28473200-28492400	Weak transcription	Gastric	stomach
2	chr3:28473800-28482400	Weak transcription	Aorta	Aorta
3	chr3:28476400-28482200	Weak transcription	Pancreas	Pancrea
4	chr3:28477000-28481600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:28478400-28481800	Weak transcription	Ovary	ovary
6	chr3:28479800-28482800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:28479800-28509000	Weak transcription	Left Ventricle	heart
8	chr3:28480600-28489000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:28480800-28485600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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