Variant report

Variant	rs6551254
Chromosome Location	chr3:28423559-28423560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10510610	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11716132	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12106746	0.83[EUR][1000 genomes]
rs12107561	0.84[EUR][1000 genomes]
rs12374021	0.83[EUR][1000 genomes]
rs12485652	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12491905	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493720	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493797	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13068978	0.84[EUR][1000 genomes]
rs13089663	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13090951	0.86[EUR][1000 genomes]
rs13095609	0.81[EUR][1000 genomes]
rs1588669	0.82[ASN][1000 genomes]
rs1599951	0.82[ASN][1000 genomes]
rs17639954	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1870258	0.83[EUR][1000 genomes]
rs2125205	0.84[EUR][1000 genomes]
rs34335277	0.83[EUR][1000 genomes]
rs34400037	0.82[ASN][1000 genomes]
rs34539152	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34637008	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35194037	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35374336	0.81[EUR][1000 genomes]
rs36106945	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4393865	0.81[EUR][1000 genomes]
rs4680912	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56058287	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251110	0.81[EUR][1000 genomes]
rs62251112	0.83[EUR][1000 genomes]
rs62251132	0.84[EUR][1000 genomes]
rs6763250	0.82[ASN][1000 genomes]
rs6799435	0.85[EUR][1000 genomes]
rs6803915	0.82[ASN][1000 genomes]
rs7629714	0.82[ASN][1000 genomes]
rs9968098	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv979765	chr3:28401267-28427998	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28420800-28433000	Weak transcription	Ovary	ovary

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